Sorghum bicolor (sorghum_bicolor)
Imported from atlas release summary for Sorghum bicolor.
2546
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2546
Candidate Genes
C3'H/CYP98A
6.37%
C4H
5.61%
BAHD
4.96%
4CL
4.46%
POD
4.01%
UGT
3.85%
UFGT
3.67%
7DLGT
3.64%
Other Families
63.45%
More Families (97)
IFS
224
3.62%
T3O
216
3.49%
CYP76
212
3.43%
F3'H/CYP75B
149
2.41%
NMT
146
2.36%
BR6OX2/CYP85A2
135
2.18%
DWF4/CYP90B1
134
2.17%
F3H
131
2.12%
CAS
126
2.04%
CYP71
109
1.76%
STR
106
1.71%
SMT1/SMT2/SMT3
100
1.62%
CAD
86
1.39%
SGD
80
1.29%
TPS
78
1.26%
GES
76
1.23%
PYKS
74
1.2%
SLS
69
1.11%
ANR
68
1.1%
HCT
68
1.1%
TRI/TRII
64
1.03%
RAS
64
1.03%
H6H
62
1.0%
PMT
61
0.99%
CCR
60
0.97%
COMT
58
0.94%
CODM/T6ODM
57
0.92%
CYP51G1
56
0.9%
T16H
55
0.89%
CSE
52
0.84%
16OMT
49
0.79%
LAC
49
0.79%
NCS
48
0.78%
IFR
46
0.74%
CYP90D1
45
0.73%
CHS
42
0.68%
G8O/G8H
33
0.53%
FNS
33
0.53%
GS
32
0.52%
IO
30
0.48%
CPD/CYP90A1
30
0.48%
PAL
27
0.44%
DFR
27
0.44%
TAT
27
0.44%
COR
26
0.42%
BBE
22
0.36%
F3'5'H/CYP75A
22
0.36%
F5H/CYP84A
22
0.36%
BR6OX1/CYP85A1
22
0.36%
8HGO
20
0.32%
CNMT
18
0.29%
LAMT
17
0.27%
MPO
15
0.24%
HPPR
15
0.24%
TYDC_DDC
13
0.21%
ANS/LDOX
13
0.21%
FPPS
13
0.21%
XMT_MXMT_DXMT
12
0.19%
SMO1/SMO2
12
0.19%
GGPPS
12
0.19%
7DLH
11
0.18%
AACT
11
0.18%
CYP719
10
0.16%
CCoAOMT
10
0.16%
CYP80B1
9
0.15%
ROT3/CYP90C1
9
0.15%
SQS/FDFT1
7
0.11%
CPR
6
0.1%
HYD1
6
0.1%
HDR/IspH
6
0.1%
ODC
5
0.08%
DWF1
5
0.08%
MCT/IspD
5
0.08%
ISY
4
0.06%
FLS
4
0.06%
DET2
4
0.06%
MVK
4
0.06%
MVD
4
0.06%
DXS
4
0.06%
HMGR
4
0.06%
6OMT_4OMT_SOMT
3
0.05%
CYP80F1
3
0.05%
CHI
3
0.05%
CPI1
3
0.05%
HMGS
3
0.05%
TDC
2
0.03%
PMK
2
0.03%
IDI
2
0.03%
DXR
2
0.03%
ADC
1
0.02%
SQE
1
0.02%
FK
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 647 | 19 | BAHD (232) | View species results |
| Alkaloid pathway | 626 | 25 | 7DLGT (108) | View species results |
| Phenylpropanoid pathway | 495 | 11 | POD (236) | View species results |
| Flavonoid pathway | 346 | 11 | UFGT (219) | View species results |
| Rosmarinic acid pathway | 230 | 7 | C4H (106) | View species results |
| Steroid pathway | 202 | 11 | CAS (99) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2346 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 439 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sbic03G0029610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic03G0036560.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic03G0037620.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic03G0039270.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic03G0040730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic04G0009110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic04G0009110.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic04G0009110.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic04G0009130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic04G0022430.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic04G0026560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic04G0033450.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic04G0034610.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic04G0034660.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic04G0036530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic05G0002880.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic05G0002890.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic05G0002940.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic05G0002950.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic05G0006060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic05G0019360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic05G0019360.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic05G0023670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic06G0002580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic06G0002580.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic06G0002580.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic06G0011850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic06G0016280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic07G0005720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic07G0010040.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic07G0017070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic07G0019080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic08G0003480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic08G0003480.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic08G0003480.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic08G0003480.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic08G0003500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic08G0003500.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic08G0018560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic08G0018570.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic08G0018580.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic09G0002200.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic09G0002240.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic09G0008680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic09G0012560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic10G0005040.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sbic10G0014450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic10G0017450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic10G0017450.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sbic10G0019460.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |