PlantSME Plant secondary metabolism enzyme database

Sorghum bicolor (sorghum_bicolor)

Imported from atlas release summary for Sorghum bicolor.

2546
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.41% Alkaloid pathway 24.59% Phenylpropanoid pathway 19.44% Flavonoid pathway 13.59% Rosmarinic acid pathway 9.03% Steroid pathway 7.93%
Family Distribution
C3'H/CYP98A 6.37% C4H 5.61% BAHD 4.96% 4CL 4.46% POD 4.01% UGT 3.85% UFGT 3.67% 7DLGT 3.64%
Other Families 63.45%
More Families (97)
IFS 224 3.62% T3O 216 3.49% CYP76 212 3.43% F3'H/CYP75B 149 2.41% NMT 146 2.36% BR6OX2/CYP85A2 135 2.18% DWF4/CYP90B1 134 2.17% F3H 131 2.12% CAS 126 2.04% CYP71 109 1.76% STR 106 1.71% SMT1/SMT2/SMT3 100 1.62% CAD 86 1.39% SGD 80 1.29% TPS 78 1.26% GES 76 1.23% PYKS 74 1.2% SLS 69 1.11% ANR 68 1.1% HCT 68 1.1% TRI/TRII 64 1.03% RAS 64 1.03% H6H 62 1.0% PMT 61 0.99% CCR 60 0.97% COMT 58 0.94% CODM/T6ODM 57 0.92% CYP51G1 56 0.9% T16H 55 0.89% CSE 52 0.84% 16OMT 49 0.79% LAC 49 0.79% NCS 48 0.78% IFR 46 0.74% CYP90D1 45 0.73% CHS 42 0.68% G8O/G8H 33 0.53% FNS 33 0.53% GS 32 0.52% IO 30 0.48% CPD/CYP90A1 30 0.48% PAL 27 0.44% DFR 27 0.44% TAT 27 0.44% COR 26 0.42% BBE 22 0.36% F3'5'H/CYP75A 22 0.36% F5H/CYP84A 22 0.36% BR6OX1/CYP85A1 22 0.36% 8HGO 20 0.32% CNMT 18 0.29% LAMT 17 0.27% MPO 15 0.24% HPPR 15 0.24% TYDC_DDC 13 0.21% ANS/LDOX 13 0.21% FPPS 13 0.21% XMT_MXMT_DXMT 12 0.19% SMO1/SMO2 12 0.19% GGPPS 12 0.19% 7DLH 11 0.18% AACT 11 0.18% CYP719 10 0.16% CCoAOMT 10 0.16% CYP80B1 9 0.15% ROT3/CYP90C1 9 0.15% SQS/FDFT1 7 0.11% CPR 6 0.1% HYD1 6 0.1% HDR/IspH 6 0.1% ODC 5 0.08% DWF1 5 0.08% MCT/IspD 5 0.08% ISY 4 0.06% FLS 4 0.06% DET2 4 0.06% MVK 4 0.06% MVD 4 0.06% DXS 4 0.06% HMGR 4 0.06% 6OMT_4OMT_SOMT 3 0.05% CYP80F1 3 0.05% CHI 3 0.05% CPI1 3 0.05% HMGS 3 0.05% TDC 2 0.03% PMK 2 0.03% IDI 2 0.03% DXR 2 0.03% ADC 1 0.02% SQE 1 0.02% FK 1 0.02% DWF7 1 0.02% DWF5 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 647 19 BAHD (232) View species results
Alkaloid pathway 626 25 7DLGT (108) View species results
Phenylpropanoid pathway 495 11 POD (236) View species results
Flavonoid pathway 346 11 UFGT (219) View species results
Rosmarinic acid pathway 230 7 C4H (106) View species results
Steroid pathway 202 11 CAS (99) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2346 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 439 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
Reset
Gene Pathway Family Confidence Status Best Target
Sbic05G0021380.1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
Sbic05G0024320.1 Alkaloid TRI/TRII medium pass TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
Sbic06G0004420.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Sbic06G0004610.1 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Sbic06G0006870.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Sbic06G0006870.2 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Sbic06G0016560.1 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Sbic06G0016590.1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Sbic06G0016600.1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Sbic07G0012900.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Sbic08G0008960.1 Alkaloid TRI/TRII medium pass TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
Sbic09G0003800.1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Sbic09G0022680.1 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Sbic09G0022680.2 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB