PlantSME Plant secondary metabolism enzyme database

Stevia rebaudiana (stevia_rebaudiana)

Imported from atlas release summary for Stevia rebaudiana.

2807
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.88% Alkaloid pathway 19.95% Phenylpropanoid pathway 17.81% Flavonoid pathway 13.68% Rosmarinic acid pathway 8.8% Steroid pathway 6.88%
Family Distribution
C4H 7.5% C3'H/CYP98A 6.87% BAHD 5.87% IFS 4.74% CYP76 4.51% UGT 4.29% 7DLGT 4.16% UFGT 4.09%
Other Families 57.99%
More Families (96)
T3O 256 3.71% 4CL 234 3.39% DWF4/CYP90B1 193 2.8% POD 174 2.52% F3'H/CYP75B 152 2.2% F3H 140 2.03% BR6OX2/CYP85A2 136 1.97% TPS 105 1.52% NMT 101 1.46% STR 101 1.46% SMT1/SMT2/SMT3 101 1.46% GES 95 1.38% CODM/T6ODM 93 1.35% CAS 92 1.33% CYP71 90 1.3% CAD 81 1.17% G8O/G8H 78 1.13% CYP90D1 74 1.07% H6H 71 1.03% T16H 71 1.03% TAT 68 0.99% COMT 65 0.94% TRI/TRII 61 0.88% 7DLH 55 0.8% PYKS 55 0.8% LAC 53 0.77% IO 52 0.75% HCT 52 0.75% F5H/CYP84A 51 0.74% CSE 51 0.74% GS 49 0.71% RAS 47 0.68% IFR 46 0.67% PAL 45 0.65% 16OMT 44 0.64% SLS 43 0.62% FNS 37 0.54% F3'5'H/CYP75A 37 0.54% CPD/CYP90A1 35 0.51% CYP51G1 34 0.49% PMT 31 0.45% BBE 31 0.45% SGD 31 0.45% FPPS 26 0.38% NCS 23 0.33% 8HGO 22 0.32% BR6OX1/CYP85A1 22 0.32% ROT3/CYP90C1 22 0.32% CCR 21 0.3% ANR 20 0.29% LAMT 19 0.28% COR 19 0.28% GGPPS 18 0.26% ANS/LDOX 16 0.23% CCoAOMT 15 0.22% ISY 14 0.2% CYP80B1 14 0.2% CHS 14 0.2% CYP719 13 0.19% HMGR 13 0.19% CNMT 11 0.16% CPR 11 0.16% HPPR 10 0.14% SMO1/SMO2 10 0.14% TYDC_DDC 9 0.13% DFR 9 0.13% SQE 9 0.13% AACT 9 0.13% MPO 8 0.12% 6OMT_4OMT_SOMT 8 0.12% DET2 8 0.12% SQS/FDFT1 7 0.1% MCT/IspD 6 0.09% CHI 5 0.07% MDS/IspF 5 0.07% MVD 5 0.07% XMT_MXMT_DXMT 4 0.06% DWF7 4 0.06% DWF5 4 0.06% DWF1 4 0.06% DXS 4 0.06% HDR/IspH 4 0.06% HYD1 3 0.04% IDI 3 0.04% MVK 3 0.04% PMK 3 0.04% FLS 2 0.03% CPI1 2 0.03% CMK/IspE 2 0.03% HMGS 2 0.03% DXR 2 0.03% CYP80F1 1 0.01% TDC 1 0.01% ADC 1 0.01% FK 1 0.01% HDS/IspG 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 923 19 BAHD (322) View species results
Alkaloid pathway 560 23 7DLGT (139) View species results
Phenylpropanoid pathway 500 12 POD (171) View species results
Flavonoid pathway 384 10 UFGT (267) View species results
Rosmarinic acid pathway 247 7 C4H (90) View species results
Steroid pathway 193 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3059 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 504 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status Best Target
Sreb11G0007680.1 Phenylpropanoid COMT medium pass COMT__00001__sp_P28002_COMT1_MEDSA
Sreb11G0012420.1 Phenylpropanoid COMT medium pass COMT__00004__sp_Q6T1F5_COMT1_AMMMJ
Sreb11G0030770.1 Phenylpropanoid COMT medium pass COMT__00001__sp_P28002_COMT1_MEDSA
SrebContig002750002470.1 Phenylpropanoid COMT medium pass COMT__00001__sp_P28002_COMT1_MEDSA
SrebContig011450007850.1 Phenylpropanoid COMT medium pass COMT__00007__sp_Q9FK25_OMT1_ARATH
SrebContig028820011340.1 Phenylpropanoid COMT medium pass COMT__00001__sp_P28002_COMT1_MEDSA
SrebContig030650011990.1 Phenylpropanoid COMT medium pass COMT__00007__sp_Q9FK25_OMT1_ARATH
SrebContig030690012030.1 Phenylpropanoid COMT medium pass COMT__00007__sp_Q9FK25_OMT1_ARATH
SrebContig031430012380.1 Phenylpropanoid COMT medium pass COMT__00001__sp_P28002_COMT1_MEDSA
SrebContig034730014490.1 Phenylpropanoid COMT medium pass COMT__00004__sp_Q6T1F5_COMT1_AMMMJ
SrebContig040450019840.1 Phenylpropanoid COMT medium pass COMT__00001__sp_P28002_COMT1_MEDSA
SrebContig044660023420.1 Phenylpropanoid COMT medium pass COMT__00004__sp_Q6T1F5_COMT1_AMMMJ
SrebContig048720027120.1 Phenylpropanoid COMT medium pass COMT__00007__sp_Q9FK25_OMT1_ARATH
SrebContig054200031880.1 Phenylpropanoid COMT medium pass COMT__00007__sp_Q9FK25_OMT1_ARATH
SrebContig054420032040.1 Phenylpropanoid COMT medium pass COMT__00007__sp_Q9FK25_OMT1_ARATH