PlantSME Plant secondary metabolism enzyme database

Strobilanthes cusia (strobilanthes_cusia)

Imported from atlas release summary for Strobilanthes cusia.

2016
Candidate Protein Records
1708
Pathway-Level Records
4427
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 31.73% Alkaloid pathway 21.37% Phenylpropanoid pathway 18.5% Flavonoid pathway 13.23% Rosmarinic acid pathway 9.6% Steroid pathway 5.56%
Family Distribution
C4H 6.75% C3'H/CYP98A 6.6% BAHD 5.24% IFS 4.34% UGT 4.13% T3O 4.09% 7DLGT 3.86% UFGT 3.84%
Other Families 61.15%
More Families (97)
4CL 163 3.68% CYP76 161 3.64% POD 137 3.09% F3H 117 2.64% DWF4/CYP90B1 111 2.51% F3'H/CYP75B 96 2.17% BR6OX2/CYP85A2 89 2.01% CAD 87 1.97% TPS 76 1.72% STR 69 1.56% NMT 69 1.56% GES 69 1.56% CYP71 69 1.56% CODM/T6ODM 68 1.54% CAS 55 1.24% BBE 50 1.13% H6H 50 1.13% TRI/TRII 48 1.08% SMT1/SMT2/SMT3 46 1.04% CYP90D1 42 0.95% IFR 40 0.9% ANR 38 0.86% RAS 38 0.86% 7DLH 36 0.81% LAC 35 0.79% PYKS 34 0.77% HCT 34 0.77% SGD 32 0.72% SLS 31 0.7% PMT 31 0.7% CSE 31 0.7% GS 30 0.68% CPD/CYP90A1 29 0.66% G8O/G8H 26 0.59% IO 26 0.59% T16H 25 0.56% TAT 25 0.56% COMT 24 0.54% NCS 23 0.52% LAMT 22 0.5% 16OMT 21 0.47% F3'5'H/CYP75A 21 0.47% PAL 21 0.47% CCR 20 0.45% 8HGO 19 0.43% ROT3/CYP90C1 18 0.41% CYP51G1 17 0.38% CNMT 15 0.34% FNS 15 0.34% F5H/CYP84A 15 0.34% COR 14 0.32% GGPPS 12 0.27% FPPS 12 0.27% BR6OX1/CYP85A1 11 0.25% SQE 11 0.25% HPPR 10 0.23% CPR 9 0.2% AACT 9 0.2% MPO 8 0.18% TDC 8 0.18% DFR 8 0.18% ANS/LDOX 8 0.18% CCoAOMT 8 0.18% CYP719 7 0.16% CHS 7 0.16% SMO1/SMO2 7 0.16% SQS/FDFT1 7 0.16% DXS 7 0.16% ISY 6 0.14% CYP80B1 6 0.14% DET2 6 0.14% HMGR 5 0.11% MVK 5 0.11% DWF1 4 0.09% MVD 4 0.09% HDR/IspH 4 0.09% TYDC_DDC 3 0.07% ADC 3 0.07% CHI 3 0.07% DXR 3 0.07% HDS/IspG 3 0.07% ODC 2 0.05% CPI1 2 0.05% DWF7 2 0.05% HYD1 2 0.05% IDI 2 0.05% PMK 2 0.05% HMGS 2 0.05% MDS/IspF 2 0.05% CMK/IspE 2 0.05% XMT_MXMT_DXMT 1 0.02% CYP80F1 1 0.02% FLS 1 0.02% DWF5 1 0.02% FK 1 0.02% MCT/IspD 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 542 19 BAHD (184) View species results
Alkaloid pathway 365 20 7DLGT (82) View species results
Phenylpropanoid pathway 316 12 POD (132) View species results
Flavonoid pathway 226 11 UFGT (160) View species results
Rosmarinic acid pathway 164 7 C4H (73) View species results
Steroid pathway 95 12 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1801 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 304 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
ScusContig015060013970.1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Scus02G0015710.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Scus12G0013400.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Scus13G0004470.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Scus02G0020710.1 Alkaloid XMT_MXMT_DXMT low borderline XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA