Syzygium grande (syzygium_grande)
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Imported from atlas release summary for Syzygium grande.
2112
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2112
Candidate Genes
UGT
6.15%
C4H
5.68%
C3'H/CYP98A
5.65%
BAHD
5.14%
7DLGT
4.7%
CYP76
3.92%
UFGT
3.88%
IFS
3.65%
Other Families
61.23%
More Families (94)
4CL
165
3.2%
POD
164
3.18%
F3H
143
2.77%
T3O
137
2.66%
DWF4/CYP90B1
136
2.64%
CAD
94
1.82%
F3'H/CYP75B
92
1.79%
CODM/T6ODM
89
1.73%
STR
84
1.63%
NMT
82
1.59%
BR6OX2/CYP85A2
82
1.59%
H6H
81
1.57%
SMT1/SMT2/SMT3
75
1.46%
TPS
72
1.4%
TRI/TRII
70
1.36%
COMT
70
1.36%
LAC
69
1.34%
CAS
68
1.32%
GES
64
1.24%
GS
51
0.99%
G8O/G8H
51
0.99%
IO
50
0.97%
CYP71
47
0.91%
7DLH
46
0.89%
F3'5'H/CYP75A
46
0.89%
T16H
44
0.85%
IFR
42
0.81%
BBE
41
0.8%
TAT
41
0.8%
CYP90D1
41
0.8%
16OMT
37
0.72%
HCT
37
0.72%
COR
36
0.7%
RAS
36
0.7%
SLS
34
0.66%
PAL
33
0.64%
CSE
33
0.64%
PMT
32
0.62%
PYKS
31
0.6%
SGD
29
0.56%
ANR
29
0.56%
F5H/CYP84A
29
0.56%
CCR
28
0.54%
NCS
26
0.5%
FNS
25
0.49%
BR6OX1/CYP85A1
23
0.45%
ROT3/CYP90C1
22
0.43%
8HGO
21
0.41%
CPD/CYP90A1
21
0.41%
CYP51G1
18
0.35%
LAMT
16
0.31%
ANS/LDOX
15
0.29%
DFR
15
0.29%
CHS
15
0.29%
CCoAOMT
13
0.25%
HPPR
11
0.21%
CYP80B1
10
0.19%
CYP719
10
0.19%
AACT
9
0.17%
SQE
7
0.14%
SQS/FDFT1
7
0.14%
CNMT
6
0.12%
CPI1
6
0.12%
HMGR
6
0.12%
GGPPS
6
0.12%
6OMT_4OMT_SOMT
5
0.1%
TDC
5
0.1%
CHI
5
0.1%
FPPS
5
0.1%
MVD
5
0.1%
MVK
5
0.1%
DXS
5
0.1%
IDI
5
0.1%
XMT_MXMT_DXMT
4
0.08%
CPR
4
0.08%
DET2
4
0.08%
TYDC_DDC
3
0.06%
ISY
3
0.06%
FLS
3
0.06%
FK
3
0.06%
MPO
2
0.04%
HYD1
2
0.04%
SMO1/SMO2
2
0.04%
DXR
2
0.04%
PMK
2
0.04%
MDS/IspF
2
0.04%
HMGS
2
0.04%
HDR/IspH
2
0.04%
HDS/IspG
2
0.04%
ODC
1
0.02%
DWF7
1
0.02%
DWF1
1
0.02%
DWF5
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 656 | 18 | UGT (275) | View species results |
| Alkaloid pathway | 453 | 25 | 7DLGT (88) | View species results |
| Phenylpropanoid pathway | 433 | 12 | POD (147) | View species results |
| Flavonoid pathway | 283 | 15 | UFGT (171) | View species results |
| Rosmarinic acid pathway | 176 | 7 | C4H (65) | View species results |
| Steroid pathway | 111 | 14 | CAS (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1913 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 338 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.1437.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00062__sp_B9T536_TPS10_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_5__1_contigs__length_43366330.3860.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.1901.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00076__sp_D0UZK2_TPS1_CITSI |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3449.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3451.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3458.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3459.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3460.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3462.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3463.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00118__sp_G8H5N0_TPS17_SOLHA |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3467.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3963.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3964.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| syzygium_grande_EVM%20prediction%20Scaffold_6__1_contigs__length_43109846.3965.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| syzygium_grande_EVM%20prediction%20Scaffold_7__2_contigs__length_41423945.2205.mRNA1 | Terpenoid | TPS | low | borderline | TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA |
| syzygium_grande_EVM%20prediction%20Scaffold_7__2_contigs__length_41423945.2312.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |
| syzygium_grande_EVM%20prediction%20Scaffold_8__1_contigs__length_39560355.1316.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_8__1_contigs__length_39560355.1356.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00076__sp_D0UZK2_TPS1_CITSI |
| syzygium_grande_EVM%20prediction%20Scaffold_8__1_contigs__length_39560355.1357.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| syzygium_grande_EVM%20prediction%20Scaffold_8__1_contigs__length_39560355.1369.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00076__sp_D0UZK2_TPS1_CITSI |
| syzygium_grande_EVM%20prediction%20Scaffold_8__1_contigs__length_39560355.1374.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00076__sp_D0UZK2_TPS1_CITSI |
| syzygium_grande_EVM%20prediction%20Scaffold_9__1_contigs__length_35655371.1852.mRNA1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |