PlantSME Plant secondary metabolism enzyme database

Syzygium grande (syzygium_grande)

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Imported from atlas release summary for Syzygium grande.

2112
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.06% Alkaloid pathway 21.45% Phenylpropanoid pathway 20.5% Flavonoid pathway 13.4% Rosmarinic acid pathway 8.33% Steroid pathway 5.26%
Family Distribution
UGT 6.15% C4H 5.68% C3'H/CYP98A 5.65% BAHD 5.14% 7DLGT 4.7% CYP76 3.92% UFGT 3.88% IFS 3.65%
Other Families 61.23%
More Families (94)
4CL 165 3.2% POD 164 3.18% F3H 143 2.77% T3O 137 2.66% DWF4/CYP90B1 136 2.64% CAD 94 1.82% F3'H/CYP75B 92 1.79% CODM/T6ODM 89 1.73% STR 84 1.63% NMT 82 1.59% BR6OX2/CYP85A2 82 1.59% H6H 81 1.57% SMT1/SMT2/SMT3 75 1.46% TPS 72 1.4% TRI/TRII 70 1.36% COMT 70 1.36% LAC 69 1.34% CAS 68 1.32% GES 64 1.24% GS 51 0.99% G8O/G8H 51 0.99% IO 50 0.97% CYP71 47 0.91% 7DLH 46 0.89% F3'5'H/CYP75A 46 0.89% T16H 44 0.85% IFR 42 0.81% BBE 41 0.8% TAT 41 0.8% CYP90D1 41 0.8% 16OMT 37 0.72% HCT 37 0.72% COR 36 0.7% RAS 36 0.7% SLS 34 0.66% PAL 33 0.64% CSE 33 0.64% PMT 32 0.62% PYKS 31 0.6% SGD 29 0.56% ANR 29 0.56% F5H/CYP84A 29 0.56% CCR 28 0.54% NCS 26 0.5% FNS 25 0.49% BR6OX1/CYP85A1 23 0.45% ROT3/CYP90C1 22 0.43% 8HGO 21 0.41% CPD/CYP90A1 21 0.41% CYP51G1 18 0.35% LAMT 16 0.31% ANS/LDOX 15 0.29% DFR 15 0.29% CHS 15 0.29% CCoAOMT 13 0.25% HPPR 11 0.21% CYP80B1 10 0.19% CYP719 10 0.19% AACT 9 0.17% SQE 7 0.14% SQS/FDFT1 7 0.14% CNMT 6 0.12% CPI1 6 0.12% HMGR 6 0.12% GGPPS 6 0.12% 6OMT_4OMT_SOMT 5 0.1% TDC 5 0.1% CHI 5 0.1% FPPS 5 0.1% MVD 5 0.1% MVK 5 0.1% DXS 5 0.1% IDI 5 0.1% XMT_MXMT_DXMT 4 0.08% CPR 4 0.08% DET2 4 0.08% TYDC_DDC 3 0.06% ISY 3 0.06% FLS 3 0.06% FK 3 0.06% MPO 2 0.04% HYD1 2 0.04% SMO1/SMO2 2 0.04% DXR 2 0.04% PMK 2 0.04% MDS/IspF 2 0.04% HMGS 2 0.04% HDR/IspH 2 0.04% HDS/IspG 2 0.04% ODC 1 0.02% DWF7 1 0.02% DWF1 1 0.02% DWF5 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 656 18 UGT (275) View species results
Alkaloid pathway 453 25 7DLGT (88) View species results
Phenylpropanoid pathway 433 12 POD (147) View species results
Flavonoid pathway 283 15 UFGT (171) View species results
Rosmarinic acid pathway 176 7 C4H (65) View species results
Steroid pathway 111 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1913 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 338 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.1151.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.1411.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.1412.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.1480.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.1487.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.1500.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.2368.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.2553.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.2554.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.2971.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.2979.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.2983.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.3145.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.3146.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.3147.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_10__1_contigs__length_32526568.3563.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2202.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2203.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2205.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2207.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2209.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2210.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2211.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2213.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2215.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
syzygium_grande_EVM%20prediction%20Scaffold_11__1_contigs__length_28611674.2216.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_1__1_contigs__length_41797999.276.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_2__1_contigs__length_27788763.2434.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_2__1_contigs__length_27788763.684.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
syzygium_grande_EVM%20prediction%20Scaffold_3__1_contigs__length_23649235.1621.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_3__1_contigs__length_23649235.2530.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_3__1_contigs__length_23649235.2531.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
syzygium_grande_EVM%20prediction%20Scaffold_3__1_contigs__length_23649235.38.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_3__1_contigs__length_23649235.423.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_3__1_contigs__length_23649235.901.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.2150.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.2389.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.2404.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.409.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.410.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.411.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.412.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_4__1_contigs__length_30130455.990.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_5__1_contigs__length_43366330.3349.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_5__1_contigs__length_43366330.3929.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_5__1_contigs__length_43366330.3941.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_5__1_contigs__length_43366330.765.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_7__2_contigs__length_41423945.2173.mRNA1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
syzygium_grande_EVM%20prediction%20Scaffold_7__2_contigs__length_41423945.2174.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
syzygium_grande_EVM%20prediction%20Scaffold_7__2_contigs__length_41423945.278.mRNA1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB