PlantSME Plant secondary metabolism enzyme database

Tectona grandis (tectona_grandis)

Imported from atlas release summary for Tectona grandis.

2417
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.81% Alkaloid pathway 19.36% Flavonoid pathway 15.85% Phenylpropanoid pathway 15.8% Rosmarinic acid pathway 10.26% Steroid pathway 5.92%
Family Distribution
C4H 7.02% C3'H/CYP98A 6.36% UGT 5.83% 7DLGT 5.31% UFGT 5.13% BAHD 4.96% CYP76 4.4% IFS 4.09%
Other Families 56.91%
More Families (97)
T3O 237 3.91% 4CL 160 2.64% F3H 152 2.5% DWF4/CYP90B1 150 2.47% POD 145 2.39% F3'H/CYP75B 141 2.32% BR6OX2/CYP85A2 121 1.99% CAD 101 1.66% CODM/T6ODM 95 1.57% CYP71 95 1.57% TPS 89 1.47% STR 88 1.45% GES 84 1.38% SMT1/SMT2/SMT3 83 1.37% NMT 70 1.15% CAS 68 1.12% H6H 65 1.07% LAC 57 0.94% BBE 56 0.92% GS 56 0.92% T16H 52 0.86% HCT 52 0.86% IFR 49 0.81% CYP90D1 49 0.81% ANR 48 0.79% RAS 46 0.76% IO 45 0.74% TRI/TRII 42 0.69% 7DLH 42 0.69% NCS 41 0.68% PMT 39 0.64% G8O/G8H 38 0.63% PYKS 37 0.61% SLS 37 0.61% CSE 36 0.59% CYP51G1 36 0.59% COMT 34 0.56% CCR 31 0.51% CPD/CYP90A1 31 0.51% 16OMT 30 0.49% FNS 30 0.49% TAT 30 0.49% F3'5'H/CYP75A 28 0.46% LAMT 27 0.44% HPPR 25 0.41% PAL 24 0.4% F5H/CYP84A 21 0.35% SGD 20 0.33% BR6OX1/CYP85A1 19 0.31% COR 18 0.3% 8HGO 17 0.28% MPO 14 0.23% ANS/LDOX 13 0.21% AACT 12 0.2% GGPPS 12 0.2% ISY 11 0.18% ROT3/CYP90C1 11 0.18% FPPS 11 0.18% CNMT 10 0.16% CYP80B1 10 0.16% DFR 10 0.16% CCoAOMT 10 0.16% CHS 9 0.15% CPR 9 0.15% SQE 8 0.13% SMO1/SMO2 8 0.13% CYP80F1 7 0.12% DXS 7 0.12% MVD 7 0.12% CHI 6 0.1% MVK 6 0.1% XMT_MXMT_DXMT 5 0.08% DET2 5 0.08% SQS/FDFT1 5 0.08% HMGR 5 0.08% TYDC_DDC 4 0.07% FK 4 0.07% CMK/IspE 4 0.07% 6OMT_4OMT_SOMT 3 0.05% ADC 3 0.05% CYP719 3 0.05% FLS 3 0.05% IDI 3 0.05% HDS/IspG 3 0.05% PMK 3 0.05% MDS/IspF 3 0.05% HMGS 3 0.05% TDC 2 0.03% DWF7 2 0.03% HYD1 2 0.03% MCT/IspD 2 0.03% HDR/IspH 2 0.03% DXR 2 0.03% DWF1 1 0.02% DWF5 1 0.02% CPI1 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 793 20 UGT (328) View species results
Alkaloid pathway 468 22 7DLGT (145) View species results
Flavonoid pathway 383 12 UFGT (296) View species results
Phenylpropanoid pathway 382 12 POD (139) View species results
Rosmarinic acid pathway 248 7 C4H (130) View species results
Steroid pathway 143 13 CAS (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2500 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 399 BAHD, HCT, RAS
Identification Result List
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Gene Pathway Family Confidence Status
tectona_grandis_Tg17g09140.t1 Alkaloid GS low borderline
tectona_grandis_Tg18g08320.t1 Alkaloid GS low borderline
tectona_grandis_Tg18g08330.t1 Alkaloid GS low borderline
tectona_grandis_TgUn033g00030.t1 Alkaloid GS low borderline
tectona_grandis_TgUn216g00070.t1 Alkaloid GS high pass
tectona_grandis_TgUn219g00030.t1 Alkaloid GS high pass