Trapa bicornis (trapa_bicornis)
/
Imported from atlas release summary for Trapa bicornis.
1255
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1255
Candidate Genes
BAHD
6.45%
C3'H/CYP98A
5.36%
C4H
4.99%
POD
4.51%
4CL
4.07%
CYP76
3.63%
IFS
3.43%
UGT
3.39%
Other Families
64.17%
More Families (95)
NMT
97
3.29%
7DLGT
91
3.09%
UFGT
89
3.02%
T3O
73
2.48%
F3H
71
2.41%
STR
66
2.24%
LAC
53
1.8%
DWF4/CYP90B1
53
1.8%
BR6OX2/CYP85A2
53
1.8%
F3'H/CYP75B
52
1.76%
SMT1/SMT2/SMT3
51
1.73%
CAS
50
1.7%
PAL
48
1.63%
CSE
46
1.56%
CODM/T6ODM
44
1.49%
IFR
44
1.49%
CAD
44
1.49%
TRI/TRII
37
1.26%
H6H
37
1.26%
CYP71
35
1.19%
TPS
31
1.05%
G8O/G8H
28
0.95%
COMT
28
0.95%
GES
27
0.92%
CYP90D1
27
0.92%
HCT
25
0.85%
GS
24
0.81%
PYKS
22
0.75%
NCS
22
0.75%
IO
20
0.68%
SGD
19
0.64%
PMT
19
0.64%
TAT
19
0.64%
RAS
19
0.64%
SLS
18
0.61%
ANR
18
0.61%
CPD/CYP90A1
18
0.61%
T16H
17
0.58%
7DLH
16
0.54%
BBE
14
0.48%
ANS/LDOX
14
0.48%
F5H/CYP84A
13
0.44%
CCR
13
0.44%
8HGO
12
0.41%
COR
12
0.41%
16OMT
11
0.37%
F3'5'H/CYP75A
11
0.37%
CPR
11
0.37%
BR6OX1/CYP85A1
11
0.37%
CNMT
10
0.34%
FNS
10
0.34%
CHS
10
0.34%
LAMT
9
0.31%
ROT3/CYP90C1
9
0.31%
CYP51G1
9
0.31%
FPPS
9
0.31%
HPPR
8
0.27%
TYDC_DDC
7
0.24%
SMO1/SMO2
7
0.24%
SQS/FDFT1
7
0.24%
HMGR
7
0.24%
GGPPS
7
0.24%
MPO
6
0.2%
ADC
6
0.2%
DET2
6
0.2%
MVD
6
0.2%
AACT
6
0.2%
CYP719
5
0.17%
DFR
5
0.17%
CCoAOMT
5
0.17%
SQE
5
0.17%
MVK
5
0.17%
IDI
5
0.17%
ISY
4
0.14%
HMGS
4
0.14%
DXS
4
0.14%
CYP80B1
3
0.1%
XMT_MXMT_DXMT
3
0.1%
HDS/IspG
3
0.1%
MCT/IspD
3
0.1%
TDC
2
0.07%
CHI
2
0.07%
CPI1
2
0.07%
DWF1
2
0.07%
FK
2
0.07%
DWF7
2
0.07%
HYD1
2
0.07%
DXR
2
0.07%
CMK/IspE
2
0.07%
PMK
2
0.07%
CYP80F1
1
0.03%
FLS
1
0.03%
DWF5
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 350 | 19 | BAHD (139) | View species results |
| Phenylpropanoid pathway | 290 | 11 | POD (118) | View species results |
| Alkaloid pathway | 261 | 19 | NMT (57) | View species results |
| Flavonoid pathway | 153 | 7 | UFGT (84) | View species results |
| Rosmarinic acid pathway | 109 | 7 | C4H (38) | View species results |
| Steroid pathway | 92 | 13 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 985 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 234 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| trapa_bicornis_GWHPBOVS016600 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| trapa_bicornis_GWHPBOVS017332 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| trapa_bicornis_GWHPBOVS017546 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| trapa_bicornis_GWHPBOVS020136 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| trapa_bicornis_GWHPBOVS020903 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| trapa_bicornis_GWHPBOVS021732 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| trapa_bicornis_GWHPBOVS021886 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| trapa_bicornis_GWHPBOVS022257 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| trapa_bicornis_GWHPBOVS022983 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| trapa_bicornis_GWHPBOVS023988 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| trapa_bicornis_GWHPBOVS024612 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| trapa_bicornis_GWHPBOVS024685 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| trapa_bicornis_GWHPBOVS027368 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| trapa_bicornis_GWHPBOVS028567 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| trapa_bicornis_GWHPBOVS029765 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| trapa_bicornis_GWHPBOVS030044 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| trapa_bicornis_GWHPBOVS030293 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| trapa_bicornis_GWHPBOVS032070 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| trapa_bicornis_GWHPBOVS032334 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| trapa_bicornis_GWHPBOVS032527 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |