PlantSME Plant secondary metabolism enzyme database

Trapa bicornis (trapa_bicornis)

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Imported from atlas release summary for Trapa bicornis.

1255
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.89% Phenylpropanoid pathway 23.11% Alkaloid pathway 20.8% Flavonoid pathway 12.19% Rosmarinic acid pathway 8.69% Steroid pathway 7.33%
Family Distribution
BAHD 6.45% C3'H/CYP98A 5.36% C4H 4.99% POD 4.51% 4CL 4.07% CYP76 3.63% IFS 3.43% UGT 3.39%
Other Families 64.17%
More Families (95)
NMT 97 3.29% 7DLGT 91 3.09% UFGT 89 3.02% T3O 73 2.48% F3H 71 2.41% STR 66 2.24% LAC 53 1.8% DWF4/CYP90B1 53 1.8% BR6OX2/CYP85A2 53 1.8% F3'H/CYP75B 52 1.76% SMT1/SMT2/SMT3 51 1.73% CAS 50 1.7% PAL 48 1.63% CSE 46 1.56% CODM/T6ODM 44 1.49% IFR 44 1.49% CAD 44 1.49% TRI/TRII 37 1.26% H6H 37 1.26% CYP71 35 1.19% TPS 31 1.05% G8O/G8H 28 0.95% COMT 28 0.95% GES 27 0.92% CYP90D1 27 0.92% HCT 25 0.85% GS 24 0.81% PYKS 22 0.75% NCS 22 0.75% IO 20 0.68% SGD 19 0.64% PMT 19 0.64% TAT 19 0.64% RAS 19 0.64% SLS 18 0.61% ANR 18 0.61% CPD/CYP90A1 18 0.61% T16H 17 0.58% 7DLH 16 0.54% BBE 14 0.48% ANS/LDOX 14 0.48% F5H/CYP84A 13 0.44% CCR 13 0.44% 8HGO 12 0.41% COR 12 0.41% 16OMT 11 0.37% F3'5'H/CYP75A 11 0.37% CPR 11 0.37% BR6OX1/CYP85A1 11 0.37% CNMT 10 0.34% FNS 10 0.34% CHS 10 0.34% LAMT 9 0.31% ROT3/CYP90C1 9 0.31% CYP51G1 9 0.31% FPPS 9 0.31% HPPR 8 0.27% TYDC_DDC 7 0.24% SMO1/SMO2 7 0.24% SQS/FDFT1 7 0.24% HMGR 7 0.24% GGPPS 7 0.24% MPO 6 0.2% ADC 6 0.2% DET2 6 0.2% MVD 6 0.2% AACT 6 0.2% CYP719 5 0.17% DFR 5 0.17% CCoAOMT 5 0.17% SQE 5 0.17% MVK 5 0.17% IDI 5 0.17% ISY 4 0.14% HMGS 4 0.14% DXS 4 0.14% CYP80B1 3 0.1% XMT_MXMT_DXMT 3 0.1% HDS/IspG 3 0.1% MCT/IspD 3 0.1% TDC 2 0.07% CHI 2 0.07% CPI1 2 0.07% DWF1 2 0.07% FK 2 0.07% DWF7 2 0.07% HYD1 2 0.07% DXR 2 0.07% CMK/IspE 2 0.07% PMK 2 0.07% CYP80F1 1 0.03% FLS 1 0.03% DWF5 1 0.03% MDS/IspF 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 350 19 BAHD (139) View species results
Phenylpropanoid pathway 290 11 POD (118) View species results
Alkaloid pathway 261 19 NMT (57) View species results
Flavonoid pathway 153 7 UFGT (84) View species results
Rosmarinic acid pathway 109 7 C4H (38) View species results
Steroid pathway 92 13 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 985 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 234 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
trapa_bicornis_GWHPBOVS029558 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
trapa_bicornis_GWHPBOVS030282 Terpenoid CYP76 medium pass CYP76__00023__sp_S4UX02_CYPH1_SALMI
trapa_bicornis_GWHPBOVS030325 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
trapa_bicornis_GWHPBOVS030531 Terpenoid CYP76 low borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI
trapa_bicornis_GWHPBOVS031922 Terpenoid CYP76 low borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
trapa_bicornis_GWHPBOVS032116 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
trapa_bicornis_GWHPBOVS032448 Terpenoid CYP76 low borderline CYP76__00016__sp_P0DXJ6_C7631_LOPWI