Vitis berlandieri x riparia (vitis_berlandieri_x_riparia)
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Imported from atlas release summary for Vitis berlandieri x riparia.
2198
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2198
Candidate Genes
C4H
7.08%
C3'H/CYP98A
6.41%
CYP76
4.77%
UGT
4.73%
IFS
4.42%
7DLGT
4.4%
UFGT
4.31%
BAHD
4.11%
Other Families
59.77%
More Families (97)
T3O
195
3.76%
DWF4/CYP90B1
141
2.72%
POD
130
2.51%
F3H
123
2.37%
F3'H/CYP75B
116
2.24%
CAD
113
2.18%
4CL
108
2.08%
CAS
94
1.81%
BR6OX2/CYP85A2
92
1.78%
LAC
89
1.72%
TPS
83
1.6%
STR
80
1.54%
CODM/T6ODM
78
1.51%
GES
78
1.51%
NMT
74
1.43%
PYKS
68
1.31%
SMT1/SMT2/SMT3
61
1.18%
PAL
60
1.16%
IO
59
1.14%
CYP71
51
0.98%
TRI/TRII
48
0.93%
CHS
48
0.93%
T16H
45
0.87%
CYP90D1
45
0.87%
H6H
42
0.81%
G8O/G8H
40
0.77%
ANR
40
0.77%
COMT
39
0.75%
GS
37
0.71%
HCT
36
0.69%
IFR
34
0.66%
SGD
32
0.62%
16OMT
32
0.62%
7DLH
32
0.62%
CSE
30
0.58%
CYP51G1
30
0.58%
FNS
29
0.56%
CPD/CYP90A1
28
0.54%
LAMT
27
0.52%
F3'5'H/CYP75A
26
0.5%
DFR
25
0.48%
F5H/CYP84A
25
0.48%
RAS
25
0.48%
PMT
24
0.46%
CCR
24
0.46%
BR6OX1/CYP85A1
24
0.46%
NCS
23
0.44%
TAT
23
0.44%
COR
22
0.42%
SLS
22
0.42%
BBE
22
0.42%
CYP80B1
16
0.31%
8HGO
12
0.23%
CNMT
11
0.21%
CPR
11
0.21%
CCoAOMT
10
0.19%
TYDC_DDC
9
0.17%
ROT3/CYP90C1
9
0.17%
DXS
9
0.17%
MPO
8
0.15%
AACT
8
0.15%
CYP719
7
0.14%
XMT_MXMT_DXMT
7
0.14%
HMGS
7
0.14%
GGPPS
7
0.14%
ISY
6
0.12%
DWF7
6
0.12%
ANS/LDOX
5
0.1%
HPPR
5
0.1%
SQS/FDFT1
5
0.1%
HDR/IspH
5
0.1%
FPPS
5
0.1%
ODC
4
0.08%
SQE
4
0.08%
DET2
4
0.08%
MVK
4
0.08%
FLS
3
0.06%
CHI
3
0.06%
DWF1
3
0.06%
SMO1/SMO2
3
0.06%
HMGR
3
0.06%
IDI
3
0.06%
MVD
3
0.06%
TDC
2
0.04%
ADC
2
0.04%
CYP80F1
2
0.04%
DWF5
2
0.04%
MCT/IspD
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 616 | 21 | UGT (236) | View species results |
| Alkaloid pathway | 496 | 22 | 7DLGT (111) | View species results |
| Phenylpropanoid pathway | 391 | 11 | POD (118) | View species results |
| Flavonoid pathway | 338 | 10 | UFGT (217) | View species results |
| Rosmarinic acid pathway | 212 | 7 | C4H (116) | View species results |
| Steroid pathway | 145 | 14 | CAS (82) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2180 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 274 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g259800.p01 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g259810.p01 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g260560.p01 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g260710.p01 | Terpenoid | BAHD | medium | pass | BAHD__00057__sp_Q8L7R3_LPCT1_ARATH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g261540.p01 | Terpenoid | BAHD | medium | pass | BAHD__00002__sp_A0A068BIF1_AT9_ACTER |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g262030.p01 | Terpenoid | BAHD | medium | pass | BAHD__00023__sp_O22975_LPAAT_ARATH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g263790.p01 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g266330.p01 | Terpenoid | BAHD | medium | pass | BAHD__00089__sp_Q9SB58_ZDH19_ARATH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g278500.p01 | Terpenoid | BAHD | low | borderline | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g279390.p01 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g279400.p01 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g279410.p01 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g279420.p01 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |