PlantSME Plant secondary metabolism enzyme database

Vitis berlandieri x riparia (vitis_berlandieri_x_riparia)

/

Imported from atlas release summary for Vitis berlandieri x riparia.

2198
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 616 21 UGT (236) View species results
Alkaloid pathway 496 22 7DLGT (111) View species results
Phenylpropanoid pathway 391 11 POD (118) View species results
Flavonoid pathway 338 10 UFGT (217) View species results
Rosmarinic acid pathway 212 7 C4H (116) View species results
Steroid pathway 145 14 CAS (82) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2180 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 274 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
Reset
Gene Pathway Family Confidence Status Best Target
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr15.ver1.0.g219860.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr15.ver1.0.g220950.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr15.ver1.0.g223790.p01 Flavonoid F3H low borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr16.ver1.0.g228010.p01 Flavonoid F3H medium borderline F3H__00004__sp_Q7XR84_FL3H3_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr16.ver1.0.g228020.p01 Flavonoid F3H medium borderline F3H__00004__sp_Q7XR84_FL3H3_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr16.ver1.0.g231070.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr16.ver1.0.g231080.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr16.ver1.0.g232490.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr16.ver1.0.g234470.p01 Flavonoid F3H low borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr16.ver1.0.g237520.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g253290.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g253560.p01 Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g254430.p01 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g254450.p01 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g254460.p01 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g254470.p01 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g254480.p01 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g256070.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g262700.p01 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277970.p01 Flavonoid F3H low borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g282990.p01 Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g283000.p01 Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g287800.p01 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ