PlantSME Plant secondary metabolism enzyme database

Vitis berlandieri x riparia (vitis_berlandieri_x_riparia)

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Imported from atlas release summary for Vitis berlandieri x riparia.

2198
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 616 21 UGT (236) View species results
Alkaloid pathway 496 22 7DLGT (111) View species results
Phenylpropanoid pathway 391 11 POD (118) View species results
Flavonoid pathway 338 10 UFGT (217) View species results
Rosmarinic acid pathway 212 7 C4H (116) View species results
Steroid pathway 145 14 CAS (82) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2180 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 274 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271750.p01 Terpenoid TPS medium pass TPS__00121__sp_I6QPS5_TPS5_MATCR
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271760.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271770.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271790.p01 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271800.p01 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271830.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271840.p01 Terpenoid TPS medium pass TPS__00119__sp_G8H5N3_TPS16_SOLLC
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271850.p01 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271860.p01 Terpenoid TPS medium pass TPS__00124__sp_I6RAQ6_TPS1_MATCR
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271870.p01 Terpenoid TPS medium pass TPS__00118__sp_G8H5N0_TPS17_SOLHA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271880.p01 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271890.p01 Terpenoid TPS medium pass TPS__00007__sp_A0A142BX74_TPS2_XANST
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271900.p01 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271910.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271920.p01 Terpenoid TPS medium pass TPS__00119__sp_G8H5N3_TPS16_SOLLC
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271930.p01 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr18.ver1.0.g271940.p01 Terpenoid TPS medium pass TPS__00128__sp_J7LMP2_TPS5_PHYDL
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g274220.p01 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g274230.p01 Terpenoid TPS medium pass TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g275620.p01 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g275630.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277010.p01 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277380.p01 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277400.p01 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277440.p01 Terpenoid TPS medium pass TPS__00148__sp_O64961_TPS9_SOLLC
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277460.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277470.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277480.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277490.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277500.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g277520.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g281950.p01 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr19.ver1.0.g289000.p01 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC