Vitis labrusca (vitis_labrusca)
/
Imported from atlas release summary for Vitis labrusca.
2006
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2006
Candidate Genes
C4H
5.66%
C3'H/CYP98A
5.41%
BAHD
4.26%
UGT
4.22%
7DLGT
3.89%
UFGT
3.79%
IFS
3.55%
CYP76
3.55%
Other Families
65.67%
More Families (97)
CAS
156
3.08%
CAD
152
3.0%
TPS
146
2.88%
T3O
134
2.64%
GES
133
2.62%
POD
129
2.55%
DWF4/CYP90B1
129
2.55%
F3H
112
2.21%
LAC
112
2.21%
4CL
111
2.19%
NMT
105
2.07%
F3'H/CYP75B
105
2.07%
STR
92
1.82%
CODM/T6ODM
84
1.66%
BR6OX2/CYP85A2
83
1.64%
PYKS
76
1.5%
PAL
66
1.3%
CYP71
60
1.18%
SMT1/SMT2/SMT3
54
1.07%
CHS
52
1.03%
IO
51
1.01%
G8O/G8H
45
0.89%
HCT
44
0.87%
TRI/TRII
41
0.81%
7DLH
41
0.81%
F5H/CYP84A
38
0.75%
H6H
37
0.73%
COMT
36
0.71%
PMT
35
0.69%
T16H
35
0.69%
F3'5'H/CYP75A
35
0.69%
DFR
35
0.69%
GS
34
0.67%
CYP90D1
33
0.65%
SLS
31
0.61%
IFR
31
0.61%
SGD
30
0.59%
RAS
30
0.59%
CSE
29
0.57%
BBE
27
0.53%
CYP80B1
27
0.53%
FNS
26
0.51%
CCR
26
0.51%
TAT
25
0.49%
CYP51G1
25
0.49%
CPD/CYP90A1
24
0.47%
ANR
23
0.45%
BR6OX1/CYP85A1
23
0.45%
NCS
22
0.43%
16OMT
17
0.34%
ANS/LDOX
17
0.34%
COR
16
0.32%
LAMT
16
0.32%
8HGO
16
0.32%
DET2
15
0.3%
CNMT
12
0.24%
TYDC_DDC
11
0.22%
CCoAOMT
11
0.22%
AACT
11
0.22%
HMGS
11
0.22%
MPO
9
0.18%
ROT3/CYP90C1
9
0.18%
SQS/FDFT1
8
0.16%
ADC
7
0.14%
CPR
7
0.14%
MVD
7
0.14%
GGPPS
6
0.12%
FPPS
6
0.12%
DXS
6
0.12%
ISY
5
0.1%
CYP719
5
0.1%
IDI
5
0.1%
ODC
4
0.08%
6OMT_4OMT_SOMT
4
0.08%
XMT_MXMT_DXMT
4
0.08%
FLS
4
0.08%
HPPR
4
0.08%
SQE
4
0.08%
HDR/IspH
4
0.08%
CYP80F1
3
0.06%
TDC
3
0.06%
CHI
3
0.06%
DWF7
3
0.06%
DWF5
3
0.06%
SMO1/SMO2
3
0.06%
FK
3
0.06%
MVK
3
0.06%
HMGR
3
0.06%
HYD1
2
0.04%
DWF1
1
0.02%
CPI1
1
0.02%
MCT/IspD
1
0.02%
DXR
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 554 | 21 | UGT (174) | View species results |
| Alkaloid pathway | 492 | 22 | GES (105) | View species results |
| Phenylpropanoid pathway | 358 | 11 | POD (106) | View species results |
| Flavonoid pathway | 311 | 12 | UFGT (187) | View species results |
| Rosmarinic acid pathway | 148 | 7 | C4H (63) | View species results |
| Steroid pathway | 143 | 14 | CAS (95) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1857 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 290 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| vitis_labrusca_maker-7-augustus-gene-19.31-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| vitis_labrusca_maker-7-augustus-gene-195.39-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| vitis_labrusca_maker-7-augustus-gene-243.33-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| vitis_labrusca_maker-7-augustus-gene-26.33-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| vitis_labrusca_maker-7-augustus-gene-95.30-mRNA-1 | Phenylpropanoid | POD | low | borderline | POD__00003__sp_A9PCL4_PRX2_POPTR |
| vitis_labrusca_maker-7-augustus-gene-95.32-mRNA-1 | Phenylpropanoid | POD | low | borderline | POD__00003__sp_A9PCL4_PRX2_POPTR |
| vitis_labrusca_maker-7-snap-gene-172.47-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| vitis_labrusca_maker-8-augustus-gene-106.23-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| vitis_labrusca_maker-8-augustus-gene-139.27-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00020__sp_Q9FE01_APX2_ORYSJ |
| vitis_labrusca_maker-8-augustus-gene-202.46-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| vitis_labrusca_maker-8-snap-gene-100.38-mRNA-1 | Phenylpropanoid | POD | low | borderline | POD__00001__sp_A5H452_PER70_MAIZE |
| vitis_labrusca_maker-8-snap-gene-174.31-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| vitis_labrusca_maker-8-snap-gene-174.35-mRNA-1 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |
| vitis_labrusca_maker-8-snap-gene-182.41-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| vitis_labrusca_maker-8-snap-gene-53.41-mRNA-1 | Phenylpropanoid | POD | low | borderline | POD__00003__sp_A9PCL4_PRX2_POPTR |
| vitis_labrusca_maker-9-augustus-gene-181.33-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| vitis_labrusca_maker-9-augustus-gene-41.29-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| vitis_labrusca_maker-Un-augustus-gene-138.37-mRNA-1 | Phenylpropanoid | POD | low | borderline | POD__00003__sp_A9PCL4_PRX2_POPTR |
| vitis_labrusca_maker-Un-snap-gene-64.25-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| vitis_labrusca_snap-1-processed-gene-179.22-mRNA-1 | Phenylpropanoid | POD | low | borderline | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| vitis_labrusca_snap-1-processed-gene-180.31-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| vitis_labrusca_snap-1-processed-gene-181.7-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| vitis_labrusca_snap-11-processed-gene-45.24-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| vitis_labrusca_snap-12-processed-gene-149.25-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| vitis_labrusca_snap-15-processed-gene-69.27-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| vitis_labrusca_snap-18-processed-gene-110.14-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| vitis_labrusca_snap-5-processed-gene-55.22-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| vitis_labrusca_snap-5-processed-gene-55.24-mRNA-1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| vitis_labrusca_snap-8-processed-gene-5.12-mRNA-1 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |