Vitis rupestris x riparia (vitis_rupestris_x_riparia)
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Imported from atlas release summary for Vitis rupestris x riparia.
2253
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2253
Candidate Genes
C4H
6.94%
C3'H/CYP98A
6.58%
CYP76
5.03%
UGT
4.59%
IFS
4.5%
7DLGT
4.17%
UFGT
4.08%
BAHD
3.96%
Other Families
60.14%
More Families (97)
T3O
167
3.18%
POD
145
2.76%
DWF4/CYP90B1
144
2.74%
F3H
138
2.63%
CAD
120
2.29%
F3'H/CYP75B
106
2.02%
4CL
99
1.89%
BR6OX2/CYP85A2
97
1.85%
LAC
94
1.79%
CAS
93
1.77%
CODM/T6ODM
90
1.72%
STR
88
1.68%
PAL
81
1.54%
TPS
76
1.45%
NMT
75
1.43%
PYKS
72
1.37%
GES
72
1.37%
G8O/G8H
62
1.18%
IO
59
1.12%
TRI/TRII
56
1.07%
SMT1/SMT2/SMT3
54
1.03%
H6H
52
0.99%
CYP71
51
0.97%
CHS
50
0.95%
T16H
49
0.93%
GS
42
0.8%
ANR
42
0.8%
CYP90D1
37
0.71%
FNS
36
0.69%
IFR
34
0.65%
COMT
32
0.61%
HCT
31
0.59%
CPD/CYP90A1
31
0.59%
BBE
29
0.55%
F3'5'H/CYP75A
29
0.55%
TAT
29
0.55%
SGD
28
0.53%
7DLH
28
0.53%
CYP51G1
28
0.53%
LAMT
27
0.51%
NCS
26
0.5%
SLS
26
0.5%
CSE
26
0.5%
PMT
24
0.46%
COR
23
0.44%
CCR
23
0.44%
DFR
22
0.42%
F5H/CYP84A
22
0.42%
RAS
22
0.42%
16OMT
21
0.4%
BR6OX1/CYP85A1
20
0.38%
8HGO
12
0.23%
CNMT
11
0.21%
TYDC_DDC
11
0.21%
ROT3/CYP90C1
10
0.19%
MPO
9
0.17%
CYP80B1
9
0.17%
CCoAOMT
9
0.17%
CPR
9
0.17%
ISY
8
0.15%
HMGS
8
0.15%
GGPPS
8
0.15%
AACT
8
0.15%
CYP719
7
0.13%
DXS
7
0.13%
CYP80F1
6
0.11%
HPPR
6
0.11%
SQE
6
0.11%
XMT_MXMT_DXMT
5
0.1%
FLS
5
0.1%
DWF7
5
0.1%
SQS/FDFT1
5
0.1%
FPPS
5
0.1%
ADC
4
0.08%
6OMT_4OMT_SOMT
4
0.08%
ANS/LDOX
4
0.08%
DET2
4
0.08%
MVK
4
0.08%
CHI
3
0.06%
SMO1/SMO2
3
0.06%
MDS/IspF
3
0.06%
HMGR
3
0.06%
CMK/IspE
3
0.06%
MVD
3
0.06%
TDC
2
0.04%
ODC
2
0.04%
DWF1
2
0.04%
DWF5
2
0.04%
MCT/IspD
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
HYD1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
PMK
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 620 | 20 | UGT (231) | View species results |
| Alkaloid pathway | 512 | 26 | 7DLGT (98) | View species results |
| Phenylpropanoid pathway | 427 | 12 | POD (140) | View species results |
| Flavonoid pathway | 332 | 11 | UFGT (202) | View species results |
| Rosmarinic acid pathway | 224 | 7 | C4H (122) | View species results |
| Steroid pathway | 138 | 13 | CAS (81) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2197 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 261 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr02.ver1.0.g021800.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g034420.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g034430.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr08.ver1.0.g119910.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr10.ver1.0.g160460.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr10.ver1.0.g160470.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr10.ver1.0.g160480.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr10.ver1.0.g164870.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr12.ver1.0.g190020.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr12.ver1.0.g190030.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr12.ver1.0.g190040.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr12.ver1.0.g192570.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr12.ver1.0.g192600.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr15.ver1.0.g249520.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr15.ver1.0.g255600.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr15.ver1.0.g255610.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr15.ver1.0.g255620.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr15.ver1.0.g255630.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr16.ver1.0.g277620.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr18.ver1.0.g304520.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr18.ver1.0.g316770.p01 | Alkaloid | 16OMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr11.ver1.0.g185010.p01 | Alkaloid | 6OMT_4OMT_SOMT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr12.ver1.0.g190000.p01 | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr12.ver1.0.g190010.p01 | Alkaloid | 6OMT_4OMT_SOMT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr15.ver1.0.g249530.p01 | Alkaloid | 6OMT_4OMT_SOMT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr01.ver1.0.g008640.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr01.ver1.0.g011780.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr02.ver1.0.g020020.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr02.ver1.0.g029550.p01 | Alkaloid | 7DLGT | high | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr02.ver1.0.g029600.p01 | Alkaloid | 7DLGT | high | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr02.ver1.0.g029610.p01 | Alkaloid | 7DLGT | high | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr02.ver1.0.g029890.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr02.ver1.0.g029980.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g038540.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g038550.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g038750.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g038830.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g038850.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g038860.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g044660.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g044730.p01 | Alkaloid | 7DLGT | high | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045000.p01 | Alkaloid | 7DLGT | high | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045530.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045540.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045550.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045570.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045580.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045590.p01 | Alkaloid | 7DLGT | medium | pass |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045600.p01 | Alkaloid | 7DLGT | low | borderline |
| vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr03.ver1.0.g045610.p01 | Alkaloid | 7DLGT | medium | pass |