PlantSME Plant secondary metabolism enzyme database

Welwitschia mirabilis (welwitschia_mirabilis)

Imported from atlas release summary for Welwitschia mirabilis.

1458
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.5% Phenylpropanoid pathway 27.09% Alkaloid pathway 22.5% Flavonoid pathway 11.93% Rosmarinic acid pathway 6.17% Steroid pathway 4.8%
Family Distribution
C4H 5.98% POD 5.02% C3'H/CYP98A 4.87% BAHD 4.87% CYP76 4.6% UGT 3.86% 4CL 3.32% 7DLGT 2.99%
Other Families 64.48%
More Families (97)
LAC 98 2.93% UFGT 87 2.6% IFS 86 2.57% F3H 85 2.54% SGD 78 2.33% NMT 71 2.12% F3'H/CYP75B 70 2.09% CODM/T6ODM 65 1.94% CAD 63 1.88% DWF4/CYP90B1 61 1.82% BR6OX2/CYP85A2 50 1.49% G8O/G8H 48 1.43% T3O 47 1.41% H6H 43 1.29% TPS 43 1.29% GS 42 1.26% BBE 39 1.17% SMT1/SMT2/SMT3 38 1.14% IO 36 1.08% IFR 35 1.05% ANR 35 1.05% HCT 35 1.05% T16H 34 1.02% PYKS 34 1.02% TRI/TRII 34 1.02% CHS 33 0.99% STR 32 0.96% GES 31 0.93% F3'5'H/CYP75A 31 0.93% CAS 31 0.93% FNS 30 0.9% COMT 30 0.9% RAS 30 0.9% 8HGO 28 0.84% PAL 27 0.81% CSE 23 0.69% CCR 23 0.69% HMGR 22 0.66% LAMT 21 0.63% CYP71 21 0.63% CYP719 20 0.6% CYP90D1 20 0.6% ODC 19 0.57% CNMT 18 0.54% 16OMT 18 0.54% CPD/CYP90A1 18 0.54% SLS 17 0.51% ANS/LDOX 15 0.45% CYP80B1 14 0.42% COR 13 0.39% DFR 11 0.33% AACT 11 0.33% NCS 10 0.3% F5H/CYP84A 10 0.3% ROT3/CYP90C1 10 0.3% PMT 9 0.27% FPPS 9 0.27% 7DLH 8 0.24% XMT_MXMT_DXMT 7 0.21% TAT 7 0.21% BR6OX1/CYP85A1 7 0.21% IDI 7 0.21% 6OMT_4OMT_SOMT 6 0.18% ISY 6 0.18% CPR 6 0.18% GGPPS 6 0.18% CYP80F1 5 0.15% ADC 5 0.15% CYP51G1 5 0.15% CCoAOMT 4 0.12% SMO1/SMO2 4 0.12% DET2 4 0.12% HYD1 4 0.12% DXR 4 0.12% MVD 4 0.12% HPPR 3 0.09% SQS/FDFT1 3 0.09% DWF5 3 0.09% MCT/IspD 3 0.09% HMGS 3 0.09% CMK/IspE 3 0.09% TYDC_DDC 2 0.06% MPO 2 0.06% TDC 2 0.06% CHI 2 0.06% CPI1 2 0.06% SQE 2 0.06% DWF1 2 0.06% FK 2 0.06% DWF7 2 0.06% PMK 2 0.06% HDR/IspH 2 0.06% MVK 2 0.06% FLS 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03% DXS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 401 19 BAHD (124) View species results
Phenylpropanoid pathway 395 13 POD (152) View species results
Alkaloid pathway 328 26 SGD (68) View species results
Flavonoid pathway 174 13 UFGT (65) View species results
Rosmarinic acid pathway 90 7 C4H (32) View species results
Steroid pathway 70 13 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1135 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Wmir10G0007880 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Wmir11G0007160 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Wmir11G0008600 Alkaloid NMT low borderline NMT__00033__sp_Q5QD03_SUVH3_CHLRE
Wmir12G0000720 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Wmir12G0004010 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Wmir13G0002870 Alkaloid NMT medium pass NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Wmir13G0006100 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Wmir13G0008680 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Wmir13G0008890 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Wmir15G0002740 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Wmir15G0006190 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Wmir15G0009450 Alkaloid NMT medium pass NMT__00034__sp_Q5VN06_CLF_ORYSJ
Wmir16G0008880 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Wmir18G0000320 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Wmir18G0002250 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Wmir19G0002970 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Wmir20G0000050 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Wmir20G0004200 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Wmir21G0005060 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Wmir21G0005620 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
WmirUNG0005300 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH