Zea mays (zea_mays)
Imported from atlas release summary for Zea mays.
3974
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3974
Candidate Genes
NMT
8.43%
BAHD
8.13%
POD
7.54%
4CL
5.69%
STR
4.59%
C4H
3.79%
C3'H/CYP98A
3.79%
UGT
2.58%
Other Families
55.45%
More Families (97)
IFS
216
2.44%
7DLGT
201
2.27%
UFGT
195
2.2%
SMT1/SMT2/SMT3
177
2.0%
T3O
172
1.94%
CYP76
168
1.89%
CYP71
165
1.86%
CAS
163
1.84%
F3'H/CYP75B
144
1.62%
DWF4/CYP90B1
136
1.53%
SGD
128
1.44%
F3H
120
1.35%
BR6OX2/CYP85A2
120
1.35%
TPS
119
1.34%
GES
114
1.29%
PAL
114
1.29%
CAD
102
1.15%
CSE
93
1.05%
SLS
91
1.03%
IFR
86
0.97%
RAS
83
0.94%
PMT
81
0.91%
PYKS
70
0.79%
ANR
67
0.76%
CCR
64
0.72%
HCT
63
0.71%
CYP90D1
63
0.71%
LAC
62
0.7%
TRI/TRII
61
0.69%
FNS
59
0.67%
GS
56
0.63%
F3'5'H/CYP75A
56
0.63%
CODM/T6ODM
55
0.62%
H6H
53
0.6%
BR6OX1/CYP85A1
53
0.6%
COMT
48
0.54%
COR
47
0.53%
16OMT
47
0.53%
7DLH
46
0.52%
CPR
43
0.48%
G8O/G8H
42
0.47%
F5H/CYP84A
37
0.42%
AACT
35
0.39%
MVD
34
0.38%
CNMT
33
0.37%
T16H
33
0.37%
NCS
32
0.36%
TAT
32
0.36%
CHS
31
0.35%
DFR
31
0.35%
MCT/IspD
31
0.35%
CPD/CYP90A1
30
0.34%
CYP51G1
29
0.33%
HMGS
29
0.33%
IO
27
0.3%
8HGO
27
0.3%
SQS/FDFT1
26
0.29%
DXS
23
0.26%
MVK
22
0.25%
HMGR
22
0.25%
GGPPS
21
0.24%
BBE
20
0.23%
CCoAOMT
20
0.23%
HPPR
17
0.19%
PMK
13
0.15%
MPO
12
0.14%
CYP719
12
0.14%
SQE
12
0.14%
FPPS
12
0.14%
ADC
11
0.12%
ANS/LDOX
11
0.12%
CHI
10
0.11%
SMO1/SMO2
10
0.11%
DWF5
10
0.11%
DXR
10
0.11%
ODC
9
0.1%
CMK/IspE
8
0.09%
IDI
8
0.09%
TYDC_DDC
7
0.08%
CYP80B1
7
0.08%
DWF1
7
0.08%
HDS/IspG
7
0.08%
LAMT
6
0.07%
XMT_MXMT_DXMT
6
0.07%
FK
6
0.07%
TDC
5
0.06%
ROT3/CYP90C1
5
0.06%
DWF7
5
0.06%
MDS/IspF
5
0.06%
ISY
4
0.05%
DET2
4
0.05%
HYD1
3
0.03%
6OMT_4OMT_SOMT
2
0.02%
CYP80F1
2
0.02%
CPI1
2
0.02%
HDR/IspH
1
0.01%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1113 | 21 | BAHD (546) | View species results |
| Alkaloid pathway | 966 | 22 | NMT (393) | View species results |
| Phenylpropanoid pathway | 957 | 12 | POD (612) | View species results |
| Flavonoid pathway | 334 | 13 | UFGT (170) | View species results |
| Steroid pathway | 327 | 14 | CAS (140) | View species results |
| Rosmarinic acid pathway | 277 | 7 | C4H (71) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2326 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 867 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Zmay08G0022090.1 | Alkaloid | T3O | medium | pass |
| Zmay08G0031550.1 | Alkaloid | T3O | medium | borderline |
| Zmay08G0031580.1 | Alkaloid | T3O | low | borderline |
| Zmay09G0003670.1 | Alkaloid | T3O | low | borderline |
| Zmay09G0006720.2 | Alkaloid | T3O | medium | pass |
| Zmay09G0011140.1 | Alkaloid | T3O | low | borderline |
| Zmay09G0012190.1 | Alkaloid | T3O | medium | borderline |
| Zmay09G0012480.1 | Alkaloid | T3O | medium | borderline |
| Zmay09G0018900.1 | Alkaloid | T3O | medium | borderline |
| Zmay09G0019160.1 | Alkaloid | T3O | medium | borderline |
| Zmay09G0020270.1 | Alkaloid | T3O | medium | borderline |
| Zmay09G0020640.1 | Alkaloid | T3O | medium | borderline |
| Zmay09G0023380.2 | Alkaloid | T3O | medium | pass |
| Zmay09G0023380.3 | Alkaloid | T3O | medium | pass |
| Zmay09G0027950.1 | Alkaloid | T3O | low | borderline |
| Zmay10G0003430.1 | Alkaloid | T3O | medium | borderline |
| Zmay10G0006450.1 | Alkaloid | T3O | medium | pass |
| Zmay10G0009900.1 | Alkaloid | T3O | medium | borderline |
| Zmay10G0012210.1 | Alkaloid | T3O | medium | borderline |
| Zmay10G0012740.1 | Alkaloid | T3O | medium | borderline |
| Zmay10G0012760.1 | Alkaloid | T3O | medium | borderline |
| Zmay10G0021770.1 | Alkaloid | T3O | medium | pass |