PlantSME Plant secondary metabolism enzyme database

Zea mays (zea_mays)

Imported from atlas release summary for Zea mays.

3974
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.01% Alkaloid pathway 24.31% Phenylpropanoid pathway 24.08% Flavonoid pathway 8.4% Steroid pathway 8.23% Rosmarinic acid pathway 6.97%
Family Distribution
NMT 8.43% BAHD 8.13% POD 7.54% 4CL 5.69% STR 4.59% C4H 3.79% C3'H/CYP98A 3.79% UGT 2.58%
Other Families 55.45%
More Families (97)
IFS 216 2.44% 7DLGT 201 2.27% UFGT 195 2.2% SMT1/SMT2/SMT3 177 2.0% T3O 172 1.94% CYP76 168 1.89% CYP71 165 1.86% CAS 163 1.84% F3'H/CYP75B 144 1.62% DWF4/CYP90B1 136 1.53% SGD 128 1.44% F3H 120 1.35% BR6OX2/CYP85A2 120 1.35% TPS 119 1.34% GES 114 1.29% PAL 114 1.29% CAD 102 1.15% CSE 93 1.05% SLS 91 1.03% IFR 86 0.97% RAS 83 0.94% PMT 81 0.91% PYKS 70 0.79% ANR 67 0.76% CCR 64 0.72% HCT 63 0.71% CYP90D1 63 0.71% LAC 62 0.7% TRI/TRII 61 0.69% FNS 59 0.67% GS 56 0.63% F3'5'H/CYP75A 56 0.63% CODM/T6ODM 55 0.62% H6H 53 0.6% BR6OX1/CYP85A1 53 0.6% COMT 48 0.54% COR 47 0.53% 16OMT 47 0.53% 7DLH 46 0.52% CPR 43 0.48% G8O/G8H 42 0.47% F5H/CYP84A 37 0.42% AACT 35 0.39% MVD 34 0.38% CNMT 33 0.37% T16H 33 0.37% NCS 32 0.36% TAT 32 0.36% CHS 31 0.35% DFR 31 0.35% MCT/IspD 31 0.35% CPD/CYP90A1 30 0.34% CYP51G1 29 0.33% HMGS 29 0.33% IO 27 0.3% 8HGO 27 0.3% SQS/FDFT1 26 0.29% DXS 23 0.26% MVK 22 0.25% HMGR 22 0.25% GGPPS 21 0.24% BBE 20 0.23% CCoAOMT 20 0.23% HPPR 17 0.19% PMK 13 0.15% MPO 12 0.14% CYP719 12 0.14% SQE 12 0.14% FPPS 12 0.14% ADC 11 0.12% ANS/LDOX 11 0.12% CHI 10 0.11% SMO1/SMO2 10 0.11% DWF5 10 0.11% DXR 10 0.11% ODC 9 0.1% CMK/IspE 8 0.09% IDI 8 0.09% TYDC_DDC 7 0.08% CYP80B1 7 0.08% DWF1 7 0.08% HDS/IspG 7 0.08% LAMT 6 0.07% XMT_MXMT_DXMT 6 0.07% FK 6 0.07% TDC 5 0.06% ROT3/CYP90C1 5 0.06% DWF7 5 0.06% MDS/IspF 5 0.06% ISY 4 0.05% DET2 4 0.05% HYD1 3 0.03% 6OMT_4OMT_SOMT 2 0.02% CYP80F1 2 0.02% CPI1 2 0.02% HDR/IspH 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1113 21 BAHD (546) View species results
Alkaloid pathway 966 22 NMT (393) View species results
Phenylpropanoid pathway 957 12 POD (612) View species results
Flavonoid pathway 334 13 UFGT (170) View species results
Steroid pathway 327 14 CAS (140) View species results
Rosmarinic acid pathway 277 7 C4H (71) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2326 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 867 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
Reset
Gene Pathway Family Confidence Status Best Target
Zmay07G0015480.2 Alkaloid TRI/TRII medium borderline TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Zmay07G0015480.5 Alkaloid TRI/TRII low borderline TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Zmay07G0025770.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Zmay08G0028520.1 Alkaloid TRI/TRII medium pass TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
Zmay09G0022290.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Zmay10G0014640.1 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Zmay10G0014640.2 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Zmay10G0014640.4 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
Zmay10G0014640.5 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Zmay10G0014640.7 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Zmay10G0020550.1 Alkaloid TRI/TRII low borderline TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB