PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
LOTjap01G0008530.1 lotus_japonicus LOTjap01G0008530.1
LOTjap03G0045640.1 lotus_japonicus LOTjap03G0045640.1
LOTjap03G0045660.1 lotus_japonicus LOTjap03G0045660.1
LOTjap05G0008910.1 lotus_japonicus LOTjap05G0008910.1
LOTjap05G0024440.1 lotus_japonicus LOTjap05G0024440.1
LOTjap05G0026570.1 lotus_japonicus LOTjap05G0026570.1
LOTjap06G0002570.1 lotus_japonicus LOTjap06G0002570.1
LOTjapContig000810003250.1 lotus_japonicus LOTjapContig000810003250.1
luffa_cylindrica_Maker00000598 luffa_cylindrica luffa_cylindrica_Maker00000598
luffa_cylindrica_Maker00000713 luffa_cylindrica luffa_cylindrica_Maker00000713
luffa_cylindrica_Maker00006192 luffa_cylindrica luffa_cylindrica_Maker00006192
luffa_cylindrica_Maker00006243 luffa_cylindrica luffa_cylindrica_Maker00006243
luffa_cylindrica_Maker00007908 luffa_cylindrica luffa_cylindrica_Maker00007908
luffa_cylindrica_Maker00007909 luffa_cylindrica luffa_cylindrica_Maker00007909
luffa_cylindrica_Maker00009938 luffa_cylindrica luffa_cylindrica_Maker00009938
luffa_cylindrica_Maker00012461 luffa_cylindrica luffa_cylindrica_Maker00012461
luffa_cylindrica_Maker00012611 luffa_cylindrica luffa_cylindrica_Maker00012611
luffa_cylindrica_Maker00012681 luffa_cylindrica luffa_cylindrica_Maker00012681
luffa_cylindrica_Maker00013171 luffa_cylindrica luffa_cylindrica_Maker00013171
luffa_cylindrica_Maker00013190 luffa_cylindrica luffa_cylindrica_Maker00013190
luffa_cylindrica_Maker00013422 luffa_cylindrica luffa_cylindrica_Maker00013422
luffa_cylindrica_Maker00013427 luffa_cylindrica luffa_cylindrica_Maker00013427
luffa_cylindrica_Maker00013549 luffa_cylindrica luffa_cylindrica_Maker00013549
luffa_cylindrica_Maker00021783 luffa_cylindrica luffa_cylindrica_Maker00021783
luffa_cylindrica_Maker00030704 luffa_cylindrica luffa_cylindrica_Maker00030704
luffa_cylindrica_Maker00030705 luffa_cylindrica luffa_cylindrica_Maker00030705
luffa_cylindrica_Maker00030731 luffa_cylindrica luffa_cylindrica_Maker00030731
luffa_cylindrica_Maker00030733 luffa_cylindrica luffa_cylindrica_Maker00030733
luffa_cylindrica_Maker00030758 luffa_cylindrica luffa_cylindrica_Maker00030758
luffa_cylindrica_Maker00039849 luffa_cylindrica luffa_cylindrica_Maker00039849