PlantSME Plant secondary metabolism enzyme database
Phenylpropanoid portable pathway

Phenylpropanoid portable pathway

Category：Phenylpropanoid pathway

Phenylpropanoid pathway definition imported from the 2026-05-17 portable BLAST/HMM package.

Representative Phenylpropanoid Reaction Route
Entry backbone to monolignol/lignin branches. Substrates, products, and condensed structural formulae show representative conversions; resolved reactions are shown as single enzymes, whereas multi-enzyme branches are shown as curated modules. Member counts come from public annotations.
6 curated steps/modules
Entry Backbone And Lignin Direction
01
Substrate
L-Phenylalanine
C9H11NO2
C6H5-CH2-CH(NH2)-COOH
Deamination to form the phenylpropene acid scaffold
PAL1910
Product
trans-Cinnamic acid
C9H8O2
C6H5-CH=CH-COOH
PAL commits the amino-acid substrate to phenylpropanoid metabolism.
02
Substrate
trans-Cinnamic acid
C9H8O2
C6H5-CH=CH-COOH
Para-hydroxylation of the aromatic ring
C4H401
Product
p-Coumaric acid
C9H8O3
4-HO-C6H4-CH=CH-COOH
C4H/CYP73A introduces the 4-hydroxyl group for downstream CoA activation.
03
Substrate
p-Coumaric acid
C9H8O3
4-HO-C6H4-CH=CH-COOH
Substrate
CoA
C21H36N7O16P3S
CoA-SH
CoA ligation and activation
4CL3434
Product
p-Coumaroyl-CoA
C30H38N7O18P3S
4-HO-C6H4-CH=CH-C(=O)-SCoA
4CL converts the free acid into a thioester used by condensation, acyltransfer, and reduction reactions.
04
Substrate
p-Coumaroyl-CoA
C30H38N7O18P3S
4-HO-C6H4-CH=CH-C(=O)-SCoA
Hydroxylation, acyl transfer, and methylation
HCT1920 C3'H/CYP98A1929 CSE2414 CCoAOMT382
Product
Feruloyl-CoA-type intermediates
C31H40N7O19P3S
3-MeO-4-HO-C6H3-CH=CH-C(=O)-SCoA
This segment remodels the p-coumaroyl scaffold into caffeoyl/feruloyl-type intermediates.
05
Substrate
Hydroxycinnamoyl-CoA
C30-31 CoA thioesters
Ar-CH=CH-C(=O)-SCoA
Reduction and S/G monolignol formation
CCR2707 CAD2978 F5H/CYP84A171 COMT1825
Product
Coniferyl/sinapyl alcohol
C10H12O3 / C11H14O4
Ar-CH=CH-CH2OH
CCR/CAD and related steps route CoA thioesters toward monolignol monomers.
06
Substrate
Monolignols
C9-C11 phenylpropanoids
Ar-CH=CH-CH2OH
Oxidative coupling and polymerization
LAC3730 POD14559
Product
Lignin polymer
(C9 unit)n
[Ar-C3]n ether/C-C polymer
LAC/POD oxidatively couple monolignols into lignin polymers.
Lineage Distribution
Assignments under this module are distributed across the following plant lineages.
All Lineages Bryophytes (38360)
Current lineage filter: Bryophytes. All species, family, module, and gene statistics below have been narrowed to this lineage.
Algae
Hits0
Bryophytes
Hits38360
Lycophytes/Ferns
Hits0
Gymnosperms
Hits0
Basal angiosperms
Hits0
Monocots
Hits0
Eudicots
Hits0
Species Distribution
Bryum knowltonii
Anthoceros agrestis Oxford
Anthoceros punctatus
Buxbaumia aphylla
Calliergon cordifolium
Archidium alternifolium
Funaria hygrometrica
Andreaea rupestris
Acrobolbus urvilleanus
Bryoxiphium norvegicum
Lineage Summary
Bryophytes
38360
Module Gene List
Reset
GeneSpeciesProtein ID
AagrBONNSc2ySwM_368G0011680 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0011680
AagrBONNSc2ySwM_368G0012440 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0012440
AagrBONNSc2ySwM_368G0015770 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0015770
AagrBONNSc2ySwM_368G0015930 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0015930
AagrBONNSc2ySwM_368G0016680 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0016680
AagrBONNSc2ySwM_368G0024560 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0024560
AagrBONNSc2ySwM_368G0024580 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0024580
AagrBONNSc2ySwM_368G0025790 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0025790
AagrBONNSc2ySwM_368G0025940 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0025940
AagrBONNSc2ySwM_368G0027860 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0027860
AagrBONNSc2ySwM_368G0028310 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0028310
AagrBONNSc2ySwM_368G0031430 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0031430
AagrBONNSc2ySwM_368G0031440 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0031440
AagrBONNSc2ySwM_368G0031450 anthoceros_agrestis_bonn AagrBONNSc2ySwM_368G0031450
AagrBONNSc2ySwM_369G0004550 anthoceros_agrestis_bonn AagrBONNSc2ySwM_369G0004550
AagrBONNSc2ySwM_369G0005730 anthoceros_agrestis_bonn AagrBONNSc2ySwM_369G0005730
AagrOXFutg000001l0000420.1 anthoceros_agrestis_oxford AagrOXFutg000001l0000420.1
AagrOXFutg000001l0000470.1 anthoceros_agrestis_oxford AagrOXFutg000001l0000470.1
AagrOXFutg000001l0000470.2 anthoceros_agrestis_oxford AagrOXFutg000001l0000470.2
AagrOXFutg000001l0000470.3 anthoceros_agrestis_oxford AagrOXFutg000001l0000470.3
AagrOXFutg000001l0000480.1 anthoceros_agrestis_oxford AagrOXFutg000001l0000480.1
AagrOXFutg000001l0000850.3 anthoceros_agrestis_oxford AagrOXFutg000001l0000850.3
AagrOXFutg000001l0001010.1 anthoceros_agrestis_oxford AagrOXFutg000001l0001010.1
AagrOXFutg000001l0001010.2 anthoceros_agrestis_oxford AagrOXFutg000001l0001010.2
AagrOXFutg000001l0001180.1 anthoceros_agrestis_oxford AagrOXFutg000001l0001180.1
AagrOXFutg000002l0005610.1 anthoceros_agrestis_oxford AagrOXFutg000002l0005610.1
AagrOXFutg000002l0005610.2 anthoceros_agrestis_oxford AagrOXFutg000002l0005610.2
AagrOXFutg000002l0006290.1 anthoceros_agrestis_oxford AagrOXFutg000002l0006290.1
AagrOXFutg000002l0007000.1 anthoceros_agrestis_oxford AagrOXFutg000002l0007000.1
AagrOXFutg000002l0007000.2 anthoceros_agrestis_oxford AagrOXFutg000002l0007000.2