PlantSME Plant secondary metabolism enzyme database

Akebia trifoliata (akebia_trifoliata)

Imported from atlas release summary for Akebia trifoliata.

1508
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.12% Alkaloid pathway 22.88% Phenylpropanoid pathway 20.49% Flavonoid pathway 14.12% Steroid pathway 7.23% Rosmarinic acid pathway 7.16%
Family Distribution
C3'H/CYP98A 6.73% C4H 6.28% BAHD 5.16% IFS 4.68% UGT 4.57% 7DLGT 4.54% UFGT 4.43% POD 3.48%
Other Families 60.15%
More Families (95)
T3O 123 3.45% CYP76 114 3.2% 4CL 102 2.86% DWF4/CYP90B1 88 2.47% F3H 81 2.27% CAD 76 2.13% BR6OX2/CYP85A2 76 2.13% CAS 64 1.79% F3'H/CYP75B 63 1.77% STR 60 1.68% NMT 57 1.6% SMT1/SMT2/SMT3 52 1.46% CSE 48 1.35% CODM/T6ODM 45 1.26% CYP71 43 1.21% GES 42 1.18% LAC 42 1.18% TPS 42 1.18% 7DLH 41 1.15% TRI/TRII 40 1.12% H6H 38 1.07% PYKS 37 1.04% CYP90D1 36 1.01% GS 34 0.95% HCT 31 0.87% RAS 30 0.84% NCS 27 0.76% IFR 27 0.76% SGD 26 0.73% T16H 25 0.7% IO 22 0.62% COMT 22 0.62% PMT 21 0.59% SLS 21 0.59% CPD/CYP90A1 20 0.56% COR 19 0.53% CCR 19 0.53% 16OMT 18 0.5% F3'5'H/CYP75A 18 0.5% ANR 18 0.5% BR6OX1/CYP85A1 18 0.5% G8O/G8H 17 0.48% CYP51G1 16 0.45% PAL 15 0.42% 8HGO 14 0.39% CNMT 14 0.39% LAMT 13 0.36% TAT 13 0.36% ANS/LDOX 12 0.34% F5H/CYP84A 12 0.34% CYP719 11 0.31% MPO 10 0.28% GGPPS 10 0.28% DFR 9 0.25% CPR 9 0.25% ROT3/CYP90C1 9 0.25% CHS 8 0.22% SQS/FDFT1 8 0.22% AACT 8 0.22% ISY 7 0.2% FNS 7 0.2% DET2 7 0.2% TYDC_DDC 6 0.17% BBE 6 0.17% MVK 6 0.17% HPPR 5 0.14% CYP80B1 4 0.11% CHI 4 0.11% SMO1/SMO2 4 0.11% FPPS 4 0.11% DXS 4 0.11% CCoAOMT 3 0.08% DWF5 3 0.08% SQE 3 0.08% MVD 3 0.08% PMK 3 0.08% HDS/IspG 3 0.08% IDI 3 0.08% ODC 2 0.06% TDC 2 0.06% ADC 2 0.06% FLS 2 0.06% HYD1 2 0.06% DWF1 2 0.06% MCT/IspD 2 0.06% HMGS 2 0.06% MDS/IspF 2 0.06% HMGR 2 0.06% 6OMT_4OMT_SOMT 1 0.03% FK 1 0.03% DWF7 1 0.03% CPI1 1 0.03% HDR/IspH 1 0.03% CMK/IspE 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 424 19 UGT (160) View species results
Alkaloid pathway 345 19 7DLGT (81) View species results
Phenylpropanoid pathway 309 11 POD (114) View species results
Flavonoid pathway 213 10 UFGT (154) View species results
Steroid pathway 109 11 CAS (57) View species results
Rosmarinic acid pathway 108 7 C4H (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1408 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 245 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
Reset
Gene Pathway Family Confidence Status Best Target
GWHPBISH000213 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH000499 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH004837 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH004978 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
GWHPBISH006107 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH008357 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
GWHPBISH008358 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH008359 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
GWHPBISH008360 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
GWHPBISH011376 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
GWHPBISH012749 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
GWHPBISH012750 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH017977 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
GWHPBISH019875 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH020596 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH020597 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH020598 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH020953 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
GWHPBISH021742 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO