PlantSME Plant secondary metabolism enzyme database

Amborella trichopoda (amborella_trichopoda)

Imported from atlas release summary for Amborella trichopoda.

1345
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Current group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.29% Alkaloid pathway 22.6% Phenylpropanoid pathway 20.74% Flavonoid pathway 14.13% Rosmarinic acid pathway 7.58% Steroid pathway 5.65%
Family Distribution
UGT 6.38% C4H 6.28% C3'H/CYP98A 5.24% 7DLGT 4.78% BAHD 4.71% POD 4.58% UFGT 4.12% 4CL 3.73%
Other Families 60.16%
More Families (97)
CYP76 108 3.54% IFS 103 3.37% T3O 96 3.14% DWF4/CYP90B1 69 2.26% F3H 66 2.16% NMT 55 1.8% CAD 53 1.73% H6H 51 1.67% F3'H/CYP75B 49 1.6% CYP71 46 1.51% STR 45 1.47% CODM/T6ODM 44 1.44% BR6OX2/CYP85A2 44 1.44% SMT1/SMT2/SMT3 40 1.31% TPS 40 1.31% G8O/G8H 38 1.24% CAS 37 1.21% IFR 33 1.08% TRI/TRII 32 1.05% F3'5'H/CYP75A 29 0.95% CSE 29 0.95% SLS 28 0.92% GES 28 0.92% SGD 28 0.92% FNS 27 0.88% GS 25 0.82% HCT 25 0.82% RAS 25 0.82% PYKS 22 0.72% F5H/CYP84A 21 0.69% T16H 20 0.65% CCR 20 0.65% LAC 20 0.65% CYP90D1 20 0.65% PMT 18 0.59% ROT3/CYP90C1 18 0.59% IO 17 0.56% ANR 17 0.56% COMT 17 0.56% 7DLH 16 0.52% ANS/LDOX 16 0.52% CYP51G1 16 0.52% PAL 15 0.49% DFR 14 0.46% NCS 13 0.43% COR 13 0.43% TAT 13 0.43% 16OMT 12 0.39% 8HGO 12 0.39% FLS 11 0.36% CPD/CYP90A1 11 0.36% LAMT 10 0.33% 6OMT_4OMT_SOMT 9 0.29% BR6OX1/CYP85A1 9 0.29% BBE 8 0.26% TYDC_DDC 8 0.26% CYP719 8 0.26% CHI 8 0.26% CHS 8 0.26% SQS/FDFT1 7 0.23% FPPS 7 0.23% CNMT 6 0.2% MPO 6 0.2% CCoAOMT 6 0.2% DET2 6 0.2% ISY 5 0.16% DXS 5 0.16% CYP80F1 4 0.13% CPR 4 0.13% MVD 4 0.13% GGPPS 4 0.13% TDC 3 0.1% HPPR 3 0.1% SQE 3 0.1% MVK 3 0.1% AACT 3 0.1% CYP80B1 2 0.07% SMO1/SMO2 2 0.07% DWF5 2 0.07% MDS/IspF 2 0.07% MCT/IspD 2 0.07% ODC 1 0.03% XMT_MXMT_DXMT 1 0.03% ADC 1 0.03% HYD1 1 0.03% CPI1 1 0.03% DWF1 1 0.03% FK 1 0.03% DWF7 1 0.03% HMGR 1 0.03% CMK/IspE 1 0.03% PMK 1 0.03% DXR 1 0.03% HDR/IspH 1 0.03% HMGS 1 0.03% IDI 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 394 19 UGT (177) View species results
Alkaloid pathway 304 25 7DLGT (81) View species results
Phenylpropanoid pathway 279 12 POD (133) View species results
Flavonoid pathway 190 12 UFGT (117) View species results
Rosmarinic acid pathway 102 7 C4H (42) View species results
Steroid pathway 76 12 CAS (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1124 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 194 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
AtriAmTr_v1.0_scaffold030820264770.1 Terpenoid CYP76 medium pass CYP76__00016__sp_P0DXJ6_C7631_LOPWI
AtriAmTr_v1.0_scaffold033140265100.1 Terpenoid CYP76 medium pass CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
AtriAmTr_v1.0_scaffold035640265590.1 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
AtriAmTr_v1.0_scaffold035880265620.1 Terpenoid CYP76 medium pass CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
AtriAmTr_v1.0_scaffold045020266910.1 Terpenoid CYP76 medium pass CYP76__00016__sp_P0DXJ6_C7631_LOPWI
AtriAmTr_v1.0_scaffold045780267040.1 Terpenoid CYP76 medium pass CYP76__00024__sp_W0FKI0_DOX1_PERHD
AtriAmTr_v1.0_scaffold053430267850.1 Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
AtriAmTr_v1.0_scaffold054720268030.1 Terpenoid CYP76 medium borderline CYP76__00005__sp_A0A125QZE2_C76K1_SALMI