Amborella trichopoda (amborella_trichopoda)
Imported from atlas release summary for Amborella trichopoda.
1345
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1345
Candidate Genes
UGT
6.38%
C4H
6.28%
C3'H/CYP98A
5.24%
7DLGT
4.78%
BAHD
4.71%
POD
4.58%
UFGT
4.12%
4CL
3.73%
Other Families
60.16%
More Families (97)
CYP76
108
3.54%
IFS
103
3.37%
T3O
96
3.14%
DWF4/CYP90B1
69
2.26%
F3H
66
2.16%
NMT
55
1.8%
CAD
53
1.73%
H6H
51
1.67%
F3'H/CYP75B
49
1.6%
CYP71
46
1.51%
STR
45
1.47%
CODM/T6ODM
44
1.44%
BR6OX2/CYP85A2
44
1.44%
SMT1/SMT2/SMT3
40
1.31%
TPS
40
1.31%
G8O/G8H
38
1.24%
CAS
37
1.21%
IFR
33
1.08%
TRI/TRII
32
1.05%
F3'5'H/CYP75A
29
0.95%
CSE
29
0.95%
SLS
28
0.92%
GES
28
0.92%
SGD
28
0.92%
FNS
27
0.88%
GS
25
0.82%
HCT
25
0.82%
RAS
25
0.82%
PYKS
22
0.72%
F5H/CYP84A
21
0.69%
T16H
20
0.65%
CCR
20
0.65%
LAC
20
0.65%
CYP90D1
20
0.65%
PMT
18
0.59%
ROT3/CYP90C1
18
0.59%
IO
17
0.56%
ANR
17
0.56%
COMT
17
0.56%
7DLH
16
0.52%
ANS/LDOX
16
0.52%
CYP51G1
16
0.52%
PAL
15
0.49%
DFR
14
0.46%
NCS
13
0.43%
COR
13
0.43%
TAT
13
0.43%
16OMT
12
0.39%
8HGO
12
0.39%
FLS
11
0.36%
CPD/CYP90A1
11
0.36%
LAMT
10
0.33%
6OMT_4OMT_SOMT
9
0.29%
BR6OX1/CYP85A1
9
0.29%
BBE
8
0.26%
TYDC_DDC
8
0.26%
CYP719
8
0.26%
CHI
8
0.26%
CHS
8
0.26%
SQS/FDFT1
7
0.23%
FPPS
7
0.23%
CNMT
6
0.2%
MPO
6
0.2%
CCoAOMT
6
0.2%
DET2
6
0.2%
ISY
5
0.16%
DXS
5
0.16%
CYP80F1
4
0.13%
CPR
4
0.13%
MVD
4
0.13%
GGPPS
4
0.13%
TDC
3
0.1%
HPPR
3
0.1%
SQE
3
0.1%
MVK
3
0.1%
AACT
3
0.1%
CYP80B1
2
0.07%
SMO1/SMO2
2
0.07%
DWF5
2
0.07%
MDS/IspF
2
0.07%
MCT/IspD
2
0.07%
ODC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
ADC
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
DWF7
1
0.03%
HMGR
1
0.03%
CMK/IspE
1
0.03%
PMK
1
0.03%
DXR
1
0.03%
HDR/IspH
1
0.03%
HMGS
1
0.03%
IDI
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 394 | 19 | UGT (177) | View species results |
| Alkaloid pathway | 304 | 25 | 7DLGT (81) | View species results |
| Phenylpropanoid pathway | 279 | 12 | POD (133) | View species results |
| Flavonoid pathway | 190 | 12 | UFGT (117) | View species results |
| Rosmarinic acid pathway | 102 | 7 | C4H (42) | View species results |
| Steroid pathway | 76 | 12 | CAS (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1124 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 194 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| AtriAmTr_v1.0_scaffold000020007530.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| AtriAmTr_v1.0_scaffold000020009580.1 | Alkaloid | NMT | medium | borderline | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| AtriAmTr_v1.0_scaffold000020012030.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| AtriAmTr_v1.0_scaffold000070028600.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| AtriAmTr_v1.0_scaffold000080030200.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| AtriAmTr_v1.0_scaffold000080030220.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| AtriAmTr_v1.0_scaffold000080030900.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| AtriAmTr_v1.0_scaffold000090034830.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| AtriAmTr_v1.0_scaffold000100041880.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| AtriAmTr_v1.0_scaffold000120047200.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| AtriAmTr_v1.0_scaffold000170059110.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| AtriAmTr_v1.0_scaffold000170059590.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| AtriAmTr_v1.0_scaffold000190062960.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| AtriAmTr_v1.0_scaffold000210070580.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| AtriAmTr_v1.0_scaffold000220071490.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| AtriAmTr_v1.0_scaffold000250083920.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| AtriAmTr_v1.0_scaffold000290089390.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| AtriAmTr_v1.0_scaffold000320097370.1 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| AtriAmTr_v1.0_scaffold000330101110.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| AtriAmTr_v1.0_scaffold000350104530.1 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| AtriAmTr_v1.0_scaffold000360106590.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| AtriAmTr_v1.0_scaffold000390110850.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| AtriAmTr_v1.0_scaffold000390112940.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| AtriAmTr_v1.0_scaffold000410117080.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| AtriAmTr_v1.0_scaffold000420119350.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| AtriAmTr_v1.0_scaffold000430119870.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| AtriAmTr_v1.0_scaffold000430119990.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| AtriAmTr_v1.0_scaffold000450125160.1 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| AtriAmTr_v1.0_scaffold000450125850.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| AtriAmTr_v1.0_scaffold000450126320.1 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| AtriAmTr_v1.0_scaffold000480132320.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| AtriAmTr_v1.0_scaffold000480132330.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| AtriAmTr_v1.0_scaffold000490133500.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| AtriAmTr_v1.0_scaffold000580150360.1 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| AtriAmTr_v1.0_scaffold000590152340.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| AtriAmTr_v1.0_scaffold000650164220.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| AtriAmTr_v1.0_scaffold000670169020.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| AtriAmTr_v1.0_scaffold000670169340.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| AtriAmTr_v1.0_scaffold000670169350.1 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| AtriAmTr_v1.0_scaffold000690171510.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| AtriAmTr_v1.0_scaffold000690171660.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| AtriAmTr_v1.0_scaffold000690172350.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| AtriAmTr_v1.0_scaffold000810189120.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| AtriAmTr_v1.0_scaffold000900196590.1 | Alkaloid | NMT | medium | borderline | NMT__00052__sp_Q9AVJ9_MXMT1_COFAR |
| AtriAmTr_v1.0_scaffold000950200690.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| AtriAmTr_v1.0_scaffold000950201600.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| AtriAmTr_v1.0_scaffold001030209200.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| AtriAmTr_v1.0_scaffold001030209210.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| AtriAmTr_v1.0_scaffold001030209220.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| AtriAmTr_v1.0_scaffold001060212160.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |