PlantSME Plant secondary metabolism enzyme database

Arabidopsis halleri (arabidopsis_halleri)

Imported from atlas release summary for Arabidopsis halleri.

49
Candidate Genes
46
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.57% Alkaloid pathway 26.53% Phenylpropanoid pathway 18.37% Rosmarinic acid pathway 10.2% Flavonoid pathway 8.16% Steroid pathway 8.16%
Family Distribution
C4H 7.75% C3'H/CYP98A 7.75% IFS 5.63% DWF4/CYP90B1 4.93% T3O 4.23% GES 3.52% BAHD 3.52% CYP76 3.52%
Other Families 59.15%
More Families (38)
TPS 5 3.52% T16H 4 2.82% CODM/T6ODM 4 2.82% SGD 4 2.82% POD 4 2.82% CYP71 4 2.82% 7DLGT 3 2.11% NMT 3 2.11% STR 3 2.11% UFGT 3 2.11% 4CL 3 2.11% F3'H/CYP75B 3 2.11% PAL 3 2.11% F3H 3 2.11% BR6OX2/CYP85A2 3 2.11% CAS 3 2.11% UGT 3 2.11% 16OMT 2 1.41% COMT 2 1.41% CAD 2 1.41% CSE 2 1.41% SQE 2 1.41% GS 1 0.7% SLS 1 0.7% TRI/TRII 1 0.7% 7DLH 1 0.7% 8HGO 1 0.7% ANS/LDOX 1 0.7% IFR 1 0.7% ANR 1 0.7% CPR 1 0.7% RAS 1 0.7% SMO1/SMO2 1 0.7% CYP90D1 1 0.7% ROT3/CYP90C1 1 0.7% CYP51G1 1 0.7% SMT1/SMT2/SMT3 1 0.7% CMK/IspE 1 0.7%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 14 5 TPS (5) View species results
Alkaloid pathway 13 5 GES (4) View species results
Phenylpropanoid pathway 9 5 POD (3) View species results
Rosmarinic acid pathway 5 3 C4H (3) View species results
Flavonoid pathway 4 2 UFGT (3) View species results
Steroid pathway 4 4 CAS (1) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 15 67 7DLH, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CYP51G1, CYP71, CYP76, CYP90D1, DWF4/CYP90B1, F3'H/CYP75B, IFS, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 2 6 BAHD, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
Reset
Gene Pathway Family Confidence Status
AhalFJVB01000334 Flavonoid C4H low borderline
AhalFJVB01000022 Rosmarinic Acid C4H low borderline
AhalFJVB01000079 Rosmarinic Acid C4H medium pass
AhalFJVB01000092 Rosmarinic Acid C4H medium pass
AhalFJVB01000174 Rosmarinic Acid C4H low borderline
AhalFJVB01000203 Rosmarinic Acid C4H low borderline
AhalFJVB01000334 Rosmarinic Acid C4H low borderline
AhalFJVB01000395 Rosmarinic Acid C4H medium pass
AhalFJVB01000460 Rosmarinic Acid C4H low borderline
AhalFJVB01001835 Rosmarinic Acid C4H low borderline
AhalFJVB01002181 Rosmarinic Acid C4H low borderline