Arabidopsis halleri (arabidopsis_halleri)
Imported from atlas release summary for Arabidopsis halleri.
49
Candidate Genes
46
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
49
Candidate Genes
C4H
7.75%
C3'H/CYP98A
7.75%
IFS
5.63%
DWF4/CYP90B1
4.93%
T3O
4.23%
GES
3.52%
BAHD
3.52%
CYP76
3.52%
Other Families
59.15%
More Families (38)
TPS
5
3.52%
T16H
4
2.82%
CODM/T6ODM
4
2.82%
SGD
4
2.82%
POD
4
2.82%
CYP71
4
2.82%
7DLGT
3
2.11%
NMT
3
2.11%
STR
3
2.11%
UFGT
3
2.11%
4CL
3
2.11%
F3'H/CYP75B
3
2.11%
PAL
3
2.11%
F3H
3
2.11%
BR6OX2/CYP85A2
3
2.11%
CAS
3
2.11%
UGT
3
2.11%
16OMT
2
1.41%
COMT
2
1.41%
CAD
2
1.41%
CSE
2
1.41%
SQE
2
1.41%
GS
1
0.7%
SLS
1
0.7%
TRI/TRII
1
0.7%
7DLH
1
0.7%
8HGO
1
0.7%
ANS/LDOX
1
0.7%
IFR
1
0.7%
ANR
1
0.7%
CPR
1
0.7%
RAS
1
0.7%
SMO1/SMO2
1
0.7%
CYP90D1
1
0.7%
ROT3/CYP90C1
1
0.7%
CYP51G1
1
0.7%
SMT1/SMT2/SMT3
1
0.7%
CMK/IspE
1
0.7%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 14 | 5 | TPS (5) | View species results |
| Alkaloid pathway | 13 | 5 | GES (4) | View species results |
| Phenylpropanoid pathway | 9 | 5 | POD (3) | View species results |
| Rosmarinic acid pathway | 5 | 3 | C4H (3) | View species results |
| Flavonoid pathway | 4 | 2 | UFGT (3) | View species results |
| Steroid pathway | 4 | 4 | CAS (1) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 15 | 67 | 7DLH, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CYP51G1, CYP71, CYP76, CYP90D1, DWF4/CYP90B1, F3'H/CYP75B, IFS, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 2 | 6 | BAHD, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| AhalFJVB01000334 | Steroid | BR6OX2/CYP85A2 | medium | borderline |
| AhalFJVB01000460 | Steroid | BR6OX2/CYP85A2 | low | borderline |
| AhalFJVB01000625 | Steroid | CAS | medium | pass |
| AhalFJVB01001690 | Steroid | CAS | low | borderline |
| AhalFJVB01001772 | Steroid | CAS | low | borderline |
| AhalFJVB01000395 | Steroid | CYP51G1 | medium | borderline |
| AhalFJVB01000174 | Steroid | CYP90D1 | medium | borderline |
| AhalFJVB01000022 | Steroid | DWF4/CYP90B1 | medium | borderline |
| AhalFJVB01000092 | Steroid | DWF4/CYP90B1 | low | borderline |
| AhalFJVB01000203 | Steroid | DWF4/CYP90B1 | low | borderline |
| AhalFJVB01000701 | Steroid | DWF4/CYP90B1 | medium | borderline |
| AhalFJVB01001033 | Steroid | DWF4/CYP90B1 | low | borderline |
| AhalFJVB01001835 | Steroid | DWF4/CYP90B1 | low | borderline |
| AhalFJVB01002181 | Steroid | DWF4/CYP90B1 | low | borderline |
| AhalFJVB01000276 | Steroid | ROT3/CYP90C1 | low | borderline |
| AhalFJVB01000013 | Steroid | SMO1/SMO2 | medium | pass |
| AhalFJVB01001506 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| AhalFJVB01001326 | Steroid | SQE | medium | pass |
| AhalFJVB01001502 | Steroid | SQE | low | borderline |
| AhalFJVB01000002 | Terpenoid | BAHD | medium | pass |
| AhalFJVB01000302 | Terpenoid | BAHD | low | borderline |
| AhalFJVB01000347 | Terpenoid | BAHD | medium | pass |
| AhalFJVB01001071 | Terpenoid | BAHD | medium | pass |
| AhalFJVB01001506 | Terpenoid | BAHD | medium | pass |
| AhalFJVB01000090 | Terpenoid | CMK/IspE | low | borderline |
| AhalFJVB01000092 | Terpenoid | CYP71 | medium | borderline |
| AhalFJVB01000542 | Terpenoid | CYP71 | medium | pass |
| AhalFJVB01000780 | Terpenoid | CYP71 | low | borderline |
| AhalFJVB01002181 | Terpenoid | CYP71 | medium | borderline |
| AhalFJVB01000022 | Terpenoid | CYP76 | medium | borderline |
| AhalFJVB01000079 | Terpenoid | CYP76 | medium | borderline |
| AhalFJVB01000203 | Terpenoid | CYP76 | medium | pass |
| AhalFJVB01000395 | Terpenoid | CYP76 | medium | borderline |
| AhalFJVB01001835 | Terpenoid | CYP76 | medium | borderline |
| AhalFJVB01000083 | Terpenoid | TPS | medium | pass |
| AhalFJVB01000332 | Terpenoid | TPS | medium | pass |
| AhalFJVB01000574 | Terpenoid | TPS | medium | pass |
| AhalFJVB01001690 | Terpenoid | TPS | medium | pass |
| AhalFJVB01001772 | Terpenoid | TPS | medium | pass |
| AhalFJVB01000103 | Terpenoid | UGT | medium | pass |
| AhalFJVB01000828 | Terpenoid | UGT | medium | pass |
| AhalFJVB01000861 | Terpenoid | UGT | medium | pass |