Arabis nemorensis (arabis_nemorensis)
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Imported from atlas release summary for Arabis nemorensis.
1171
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1171
Candidate Genes
BAHD
6.37%
C3'H/CYP98A
6.17%
C4H
5.32%
POD
4.31%
4CL
4.07%
CYP76
3.9%
IFS
3.69%
UGT
3.25%
Other Families
62.92%
More Families (96)
T3O
95
3.22%
UFGT
91
3.08%
7DLGT
88
2.98%
NMT
86
2.92%
F3H
84
2.85%
DWF4/CYP90B1
67
2.27%
BR6OX2/CYP85A2
60
2.03%
CODM/T6ODM
56
1.9%
STR
54
1.83%
F3'H/CYP75B
53
1.8%
SMT1/SMT2/SMT3
45
1.53%
H6H
44
1.49%
CAS
44
1.49%
SGD
42
1.42%
CAD
38
1.29%
CSE
37
1.25%
CYP71
34
1.15%
BBE
33
1.12%
TRI/TRII
33
1.12%
IFR
33
1.12%
FNS
28
0.95%
TAT
28
0.95%
PYKS
27
0.92%
SLS
26
0.88%
COMT
25
0.85%
T16H
23
0.78%
G8O/G8H
23
0.78%
RAS
23
0.78%
TPS
23
0.78%
IO
22
0.75%
LAC
22
0.75%
GES
21
0.71%
CCR
18
0.61%
CYP90D1
18
0.61%
ANR
17
0.58%
HCT
17
0.58%
8HGO
16
0.54%
GS
16
0.54%
F3'5'H/CYP75A
16
0.54%
7DLH
15
0.51%
CPD/CYP90A1
15
0.51%
GGPPS
15
0.51%
16OMT
14
0.47%
LAMT
14
0.47%
ANS/LDOX
14
0.47%
F5H/CYP84A
13
0.44%
BR6OX1/CYP85A1
13
0.44%
CYP51G1
13
0.44%
PAL
12
0.41%
NCS
11
0.37%
PMT
10
0.34%
DFR
10
0.34%
COR
9
0.31%
CPR
9
0.31%
CNMT
8
0.27%
AACT
8
0.27%
FPPS
8
0.27%
CYP80B1
7
0.24%
ROT3/CYP90C1
7
0.24%
SQE
7
0.24%
CYP719
6
0.2%
CHI
6
0.2%
CHS
5
0.17%
FLS
5
0.17%
CCoAOMT
5
0.17%
SQS/FDFT1
5
0.17%
CYP80F1
4
0.14%
MPO
4
0.14%
SMO1/SMO2
4
0.14%
MVK
4
0.14%
MVD
4
0.14%
HPPR
3
0.1%
DET2
3
0.1%
HMGS
3
0.1%
HMGR
3
0.1%
DXS
3
0.1%
DXR
3
0.1%
ISY
2
0.07%
TDC
2
0.07%
ADC
2
0.07%
DWF7
2
0.07%
DWF1
2
0.07%
DWF5
2
0.07%
CPI1
2
0.07%
IDI
2
0.07%
HDS/IspG
2
0.07%
XMT_MXMT_DXMT
1
0.03%
ODC
1
0.03%
TYDC_DDC
1
0.03%
HYD1
1
0.03%
FK
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
CMK/IspE
1
0.03%
MCT/IspD
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 352 | 21 | BAHD (152) | View species results |
| Phenylpropanoid pathway | 257 | 12 | POD (121) | View species results |
| Alkaloid pathway | 244 | 19 | NMT (50) | View species results |
| Flavonoid pathway | 143 | 11 | UFGT (85) | View species results |
| Rosmarinic acid pathway | 91 | 7 | C4H (31) | View species results |
| Steroid pathway | 84 | 12 | CAS (36) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1093 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 228 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| arabis_nemorensis_VVA90305.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVA90306.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVA90742.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| arabis_nemorensis_VVA91388.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| arabis_nemorensis_VVA92430.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVA93988.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| arabis_nemorensis_VVA95371.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVA96313.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| arabis_nemorensis_VVA96547.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| arabis_nemorensis_VVA97417.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| arabis_nemorensis_VVB00454.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| arabis_nemorensis_VVB00619.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVB00730.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVB00957.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| arabis_nemorensis_VVB01322.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVB01873.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| arabis_nemorensis_VVB02519.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| arabis_nemorensis_VVB03582.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| arabis_nemorensis_VVB03583.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| arabis_nemorensis_VVB04172.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| arabis_nemorensis_VVB04174.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| arabis_nemorensis_VVB05379.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| arabis_nemorensis_VVB06479.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| arabis_nemorensis_VVB07763.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| arabis_nemorensis_VVB09083.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| arabis_nemorensis_VVB12960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| arabis_nemorensis_VVB13257.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| arabis_nemorensis_VVB13399.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| arabis_nemorensis_VVB13907.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| arabis_nemorensis_VVB15037.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVB15350.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| arabis_nemorensis_VVB15520.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| arabis_nemorensis_VVB15556.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |