PlantSME Plant secondary metabolism enzyme database

Atalantia buxifolia (atalantia_buxifolia)

Imported from atlas release summary for Atalantia buxifolia.

1406
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.51% Alkaloid pathway 22.9% Phenylpropanoid pathway 20.55% Flavonoid pathway 10.95% Rosmarinic acid pathway 9.03% Steroid pathway 6.05%
Family Distribution
BAHD 6.99% C4H 5.96% C3'H/CYP98A 5.38% UGT 4.08% POD 3.87% 4CL 3.81% CYP76 3.66% 7DLGT 3.42%
Other Families 62.84%
More Families (96)
IFS 104 3.14% UFGT 95 2.87% T3O 90 2.72% F3H 89 2.69% NMT 78 2.36% DWF4/CYP90B1 75 2.27% F3'H/CYP75B 66 2.0% STR 63 1.91% CODM/T6ODM 57 1.72% BR6OX2/CYP85A2 57 1.72% HCT 55 1.66% CAD 47 1.42% CAS 46 1.39% RAS 42 1.27% CYP71 40 1.21% IFR 39 1.18% SMT1/SMT2/SMT3 38 1.15% CSE 37 1.12% COMT 37 1.12% TPS 37 1.12% T16H 36 1.09% GES 36 1.09% H6H 34 1.03% TRI/TRII 33 1.0% G8O/G8H 33 1.0% TAT 31 0.94% PMT 28 0.85% ISY 27 0.82% LAC 27 0.82% 16OMT 26 0.79% SGD 25 0.76% GS 24 0.73% FNS 23 0.7% ANR 23 0.7% CCR 23 0.7% CYP90D1 22 0.67% COR 21 0.64% PYKS 21 0.64% F3'5'H/CYP75A 21 0.64% NCS 19 0.57% LAMT 18 0.54% IO 17 0.51% 7DLH 17 0.51% SLS 15 0.45% PAL 15 0.45% GGPPS 14 0.42% TYDC_DDC 13 0.39% 8HGO 13 0.39% DFR 13 0.39% ANS/LDOX 13 0.39% CNMT 11 0.33% F5H/CYP84A 11 0.33% CPD/CYP90A1 11 0.33% CYP719 10 0.3% SQS/FDFT1 9 0.27% FPPS 9 0.27% MPO 8 0.24% ODC 8 0.24% CCoAOMT 8 0.24% HPPR 8 0.24% CYP51G1 7 0.21% BR6OX1/CYP85A1 7 0.21% SQE 7 0.21% AACT 7 0.21% CPR 6 0.18% ROT3/CYP90C1 6 0.18% XMT_MXMT_DXMT 5 0.15% CYP80B1 5 0.15% CHI 5 0.15% DXS 5 0.15% MVK 5 0.15% CHS 4 0.12% MCT/IspD 4 0.12% 6OMT_4OMT_SOMT 3 0.09% DWF7 3 0.09% HYD1 3 0.09% MVD 3 0.09% DXR 3 0.09% BBE 2 0.06% FLS 2 0.06% SMO1/SMO2 2 0.06% DET2 2 0.06% HMGR 2 0.06% HMGS 2 0.06% TDC 1 0.03% ADC 1 0.03% DWF5 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF1 1 0.03% GPPS 1 0.03% CMK/IspE 1 0.03% PMK 1 0.03% MDS/IspF 1 0.03% IDI 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 429 18 BAHD (184) View species results
Alkaloid pathway 322 24 7DLGT (52) View species results
Phenylpropanoid pathway 289 11 POD (111) View species results
Flavonoid pathway 154 12 UFGT (85) View species results
Rosmarinic acid pathway 127 7 C4H (31) View species results
Steroid pathway 85 12 CAS (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1146 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 328 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Abu1g_000870.1 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
Abu4g_020800.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Abu5g_011390.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Abu6g_004930.1 Terpenoid FPPS medium pass FPPS__00004__sp_O22043_GGPP6_ARATH
Abu6g_005160.1 Terpenoid FPPS medium borderline FPPS__00007__sp_P80042_GGPPS_CAPAN
Abu6g_014230.3 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Abu8g_008880.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Abu8g_012190.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Abu8g_012220.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC