PlantSME Plant secondary metabolism enzyme database

Benincasa hispida (benincasa_hispida)

Imported from atlas release summary for Benincasa hispida.

1311
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.29% Alkaloid pathway 20.59% Phenylpropanoid pathway 19.53% Flavonoid pathway 13.96% Rosmarinic acid pathway 11.29% Steroid pathway 5.34%
Family Distribution
C4H 7.3% C3'H/CYP98A 6.0% CYP76 5.04% BAHD 4.82% UGT 4.27% IFS 4.21% 4CL 4.02% 7DLGT 3.73%
Other Families 60.61%
More Families (96)
UFGT 116 3.7% POD 105 3.35% T3O 100 3.19% DWF4/CYP90B1 71 2.26% F3H 68 2.17% NMT 65 2.07% F3'H/CYP75B 61 1.95% PAL 51 1.63% STR 44 1.4% BR6OX2/CYP85A2 44 1.4% H6H 43 1.37% TPS 43 1.37% CAD 38 1.21% SMT1/SMT2/SMT3 37 1.18% TRI/TRII 36 1.15% CODM/T6ODM 35 1.12% GES 35 1.12% CAS 35 1.12% IO 34 1.08% IFR 33 1.05% G8O/G8H 32 1.02% COMT 31 0.99% CYP90D1 31 0.99% T16H 29 0.93% BBE 26 0.83% LAC 25 0.8% F5H/CYP84A 25 0.8% HCT 24 0.77% 16OMT 23 0.73% RAS 23 0.73% CYP71 23 0.73% GS 22 0.7% SGD 22 0.7% SLS 21 0.67% F3'5'H/CYP75A 21 0.67% CCR 21 0.67% CSE 21 0.67% PYKS 19 0.61% TAT 19 0.61% CPD/CYP90A1 19 0.61% CYP51G1 19 0.61% PMT 18 0.57% FNS 18 0.57% ANR 17 0.54% BR6OX1/CYP85A1 17 0.54% CNMT 15 0.48% NCS 13 0.41% 8HGO 12 0.38% COR 12 0.38% DFR 12 0.38% DXS 10 0.32% LAMT 9 0.29% ROT3/CYP90C1 9 0.29% CYP719 8 0.26% CYP80B1 8 0.26% HPPR 8 0.26% AACT 8 0.26% 7DLH 7 0.22% ANS/LDOX 7 0.22% MPO 6 0.19% CHS 6 0.19% CPR 6 0.19% FPPS 6 0.19% SQS/FDFT1 5 0.16% GGPPS 5 0.16% 6OMT_4OMT_SOMT 4 0.13% CHI 4 0.13% CCoAOMT 4 0.13% DWF1 4 0.13% SQE 4 0.13% DET2 4 0.13% HMGR 4 0.13% XMT_MXMT_DXMT 3 0.1% FLS 3 0.1% MVK 3 0.1% MVD 3 0.1% HDR/IspH 3 0.1% ODC 2 0.06% TYDC_DDC 2 0.06% ISY 2 0.06% CPI1 2 0.06% SMO1/SMO2 2 0.06% PMK 2 0.06% TDC 1 0.03% ADC 1 0.03% HYD1 1 0.03% DWF7 1 0.03% DWF5 1 0.03% FK 1 0.03% MDS/IspF 1 0.03% DXR 1 0.03% CMK/IspE 1 0.03% MCT/IspD 1 0.03% IDI 1 0.03% HDS/IspG 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 384 18 UGT (123) View species results
Alkaloid pathway 270 23 7DLGT (60) View species results
Phenylpropanoid pathway 256 11 POD (101) View species results
Flavonoid pathway 183 7 UFGT (108) View species results
Rosmarinic acid pathway 148 7 C4H (66) View species results
Steroid pathway 70 11 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1286 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 198 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ODC
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Gene Pathway Family Confidence Status Best Target
Bhis04G0000820.1 Alkaloid ODC medium pass ODC__00004__sp_Q9FPK5_ODC_NICGU
Bhis04G0000830.1 Alkaloid ODC medium pass ODC__00002__sp_E0WN94_ODC_NICGL