PlantSME Plant secondary metabolism enzyme database

Brachypodium mexicanum (brachypodium_mexicanum)

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Imported from atlas release summary for Brachypodium mexicanum.

2781
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.8% Phenylpropanoid pathway 23.77% Alkaloid pathway 21.68% Flavonoid pathway 13.77% Rosmarinic acid pathway 7.34% Steroid pathway 5.65%
Family Distribution
BAHD 6.74% C3'H/CYP98A 5.75% C4H 5.55% POD 5.55% UGT 4.67% 7DLGT 4.52% UFGT 4.36% 4CL 3.84%
Other Families 59.03%
More Families (97)
IFS 202 3.11% CYP76 190 2.93% T3O 188 2.9% DWF4/CYP90B1 158 2.44% F3'H/CYP75B 156 2.4% NMT 153 2.36% F3H 138 2.13% BR6OX2/CYP85A2 125 1.93% STR 117 1.8% SMT1/SMT2/SMT3 113 1.74% CYP71 96 1.48% RAS 88 1.36% CSE 77 1.19% CODM/T6ODM 76 1.17% SLS 75 1.16% TRI/TRII 74 1.14% H6H 71 1.09% PYKS 71 1.09% HCT 71 1.09% LAC 71 1.09% CAD 66 1.02% PMT 62 0.96% IFR 62 0.96% SGD 58 0.89% CAS 58 0.89% T16H 56 0.86% CCR 55 0.85% TPS 50 0.77% ANR 49 0.76% GES 45 0.69% COMT 44 0.68% CYP90D1 43 0.66% FNS 42 0.65% G8O/G8H 40 0.62% PAL 39 0.6% GS 35 0.54% IO 33 0.51% 16OMT 32 0.49% CYP51G1 32 0.49% NCS 31 0.48% DFR 28 0.43% BBE 24 0.37% F5H/CYP84A 24 0.37% CPD/CYP90A1 24 0.37% CHS 23 0.35% TYDC_DDC 22 0.34% BR6OX1/CYP85A1 22 0.34% F3'5'H/CYP75A 21 0.32% 8HGO 20 0.31% TAT 18 0.28% CNMT 17 0.26% COR 17 0.26% CYP80B1 17 0.26% CCoAOMT 17 0.26% 7DLH 16 0.25% LAMT 16 0.25% ANS/LDOX 15 0.23% CPR 14 0.22% SMO1/SMO2 13 0.2% SQS/FDFT1 13 0.2% FPPS 13 0.2% GGPPS 12 0.18% AACT 11 0.17% TDC 9 0.14% HPPR 9 0.14% ROT3/CYP90C1 9 0.14% DWF1 9 0.14% MVK 9 0.14% MPO 8 0.12% MVD 8 0.12% HMGR 8 0.12% CYP719 7 0.11% CHI 7 0.11% MCT/IspD 7 0.11% FLS 6 0.09% DET2 6 0.09% PMK 6 0.09% ADC 5 0.08% IDI 5 0.08% HMGS 5 0.08% DXS 5 0.08% XMT_MXMT_DXMT 4 0.06% ODC 4 0.06% SQE 4 0.06% HDS/IspG 4 0.06% CPI1 3 0.05% DWF5 3 0.05% MDS/IspF 3 0.05% HDR/IspH 3 0.05% ISY 2 0.03% DWF7 2 0.03% HYD1 2 0.03% FK 2 0.03% DXR 2 0.03% CMK/IspE 2 0.03% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 773 19 BAHD (315) View species results
Phenylpropanoid pathway 661 11 POD (338) View species results
Alkaloid pathway 603 23 7DLGT (133) View species results
Flavonoid pathway 383 11 UFGT (256) View species results
Rosmarinic acid pathway 204 7 C4H (75) View species results
Steroid pathway 157 12 SMT1/SMT2/SMT3 (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2268 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 596 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
brachypodium_mexicanum_Brame.02PG260100.1.p Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
brachypodium_mexicanum_Brame.02PG312500.1.p Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
brachypodium_mexicanum_Brame.02UG085300.1.p Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
brachypodium_mexicanum_Brame.02UG109800.1.p Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
brachypodium_mexicanum_Brame.02UG453000.1.p Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
brachypodium_mexicanum_Brame.03PG212200.1.p Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
brachypodium_mexicanum_Brame.03UG183000.1.p Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
brachypodium_mexicanum_Brame.04PG248900.1.p Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
brachypodium_mexicanum_Brame.04UG220600.1.p Flavonoid CHS low borderline CHS__00009__sp_Q9AU11_PKS1_RUBID
brachypodium_mexicanum_Brame.05PG177700.1.p Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
brachypodium_mexicanum_Brame.05PG178000.1.p Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
brachypodium_mexicanum_Brame.05UG144800.1.p Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
brachypodium_mexicanum_Brame.06PG153700.1.p Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
brachypodium_mexicanum_Brame.06UG138400.1.p Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
brachypodium_mexicanum_Brame.06UG151800.1.p Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
brachypodium_mexicanum_Brame.06UG184800.1.p Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
brachypodium_mexicanum_Brame.06UG241000.1.p Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
brachypodium_mexicanum_Brame.07PG195500.1.p Flavonoid CHS low borderline CHS__00003__sp_B0LDU6_PKS5_RUBID
brachypodium_mexicanum_Brame.07UG164000.1.p Flavonoid CHS low borderline CHS__00003__sp_B0LDU6_PKS5_RUBID
brachypodium_mexicanum_Brame.07UG224900.1.p Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
brachypodium_mexicanum_Brame.08PG266700.1.p Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
brachypodium_mexicanum_Brame.10PG081100.1.p Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
brachypodium_mexicanum_Brame.10UG111300.1.p Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN