PlantSME Plant secondary metabolism enzyme database

Brachypodium mexicanum (brachypodium_mexicanum)

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Imported from atlas release summary for Brachypodium mexicanum.

2781
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.8% Phenylpropanoid pathway 23.77% Alkaloid pathway 21.68% Flavonoid pathway 13.77% Rosmarinic acid pathway 7.34% Steroid pathway 5.65%
Family Distribution
BAHD 6.74% C3'H/CYP98A 5.75% C4H 5.55% POD 5.55% UGT 4.67% 7DLGT 4.52% UFGT 4.36% 4CL 3.84%
Other Families 59.03%
More Families (97)
IFS 202 3.11% CYP76 190 2.93% T3O 188 2.9% DWF4/CYP90B1 158 2.44% F3'H/CYP75B 156 2.4% NMT 153 2.36% F3H 138 2.13% BR6OX2/CYP85A2 125 1.93% STR 117 1.8% SMT1/SMT2/SMT3 113 1.74% CYP71 96 1.48% RAS 88 1.36% CSE 77 1.19% CODM/T6ODM 76 1.17% SLS 75 1.16% TRI/TRII 74 1.14% H6H 71 1.09% PYKS 71 1.09% HCT 71 1.09% LAC 71 1.09% CAD 66 1.02% PMT 62 0.96% IFR 62 0.96% SGD 58 0.89% CAS 58 0.89% T16H 56 0.86% CCR 55 0.85% TPS 50 0.77% ANR 49 0.76% GES 45 0.69% COMT 44 0.68% CYP90D1 43 0.66% FNS 42 0.65% G8O/G8H 40 0.62% PAL 39 0.6% GS 35 0.54% IO 33 0.51% 16OMT 32 0.49% CYP51G1 32 0.49% NCS 31 0.48% DFR 28 0.43% BBE 24 0.37% F5H/CYP84A 24 0.37% CPD/CYP90A1 24 0.37% CHS 23 0.35% TYDC_DDC 22 0.34% BR6OX1/CYP85A1 22 0.34% F3'5'H/CYP75A 21 0.32% 8HGO 20 0.31% TAT 18 0.28% CNMT 17 0.26% COR 17 0.26% CYP80B1 17 0.26% CCoAOMT 17 0.26% 7DLH 16 0.25% LAMT 16 0.25% ANS/LDOX 15 0.23% CPR 14 0.22% SMO1/SMO2 13 0.2% SQS/FDFT1 13 0.2% FPPS 13 0.2% GGPPS 12 0.18% AACT 11 0.17% TDC 9 0.14% HPPR 9 0.14% ROT3/CYP90C1 9 0.14% DWF1 9 0.14% MVK 9 0.14% MPO 8 0.12% MVD 8 0.12% HMGR 8 0.12% CYP719 7 0.11% CHI 7 0.11% MCT/IspD 7 0.11% FLS 6 0.09% DET2 6 0.09% PMK 6 0.09% ADC 5 0.08% IDI 5 0.08% HMGS 5 0.08% DXS 5 0.08% XMT_MXMT_DXMT 4 0.06% ODC 4 0.06% SQE 4 0.06% HDS/IspG 4 0.06% CPI1 3 0.05% DWF5 3 0.05% MDS/IspF 3 0.05% HDR/IspH 3 0.05% ISY 2 0.03% DWF7 2 0.03% HYD1 2 0.03% FK 2 0.03% DXR 2 0.03% CMK/IspE 2 0.03% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 773 19 BAHD (315) View species results
Phenylpropanoid pathway 661 11 POD (338) View species results
Alkaloid pathway 603 23 7DLGT (133) View species results
Flavonoid pathway 383 11 UFGT (256) View species results
Rosmarinic acid pathway 204 7 C4H (75) View species results
Steroid pathway 157 12 SMT1/SMT2/SMT3 (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2268 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 596 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
brachypodium_mexicanum_Brame.08PG069600.1.p Terpenoid CYP76 medium borderline CYP76__00016__sp_P0DXJ6_C7631_LOPWI
brachypodium_mexicanum_Brame.08PG088500.1.p Terpenoid CYP76 medium pass CYP76__00016__sp_P0DXJ6_C7631_LOPWI
brachypodium_mexicanum_Brame.08PG093900.1.p Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
brachypodium_mexicanum_Brame.08PG136200.1.p Terpenoid CYP76 medium borderline CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF
brachypodium_mexicanum_Brame.08PG136300.1.p Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
brachypodium_mexicanum_Brame.08PG191600.1.p Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
brachypodium_mexicanum_Brame.08UG069900.1.p Terpenoid CYP76 medium borderline CYP76__00016__sp_P0DXJ6_C7631_LOPWI
brachypodium_mexicanum_Brame.08UG090100.1.p Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
brachypodium_mexicanum_Brame.08UG094800.1.p Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
brachypodium_mexicanum_Brame.08UG127600.1.p Terpenoid CYP76 low borderline CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM
brachypodium_mexicanum_Brame.08UG166600.1.p Terpenoid CYP76 medium borderline CYP76__00014__sp_I3PFJ5_C76AD_BETVU
brachypodium_mexicanum_Brame.08UG167100.1.p Terpenoid CYP76 medium borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
brachypodium_mexicanum_Brame.08UG191900.1.p Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
brachypodium_mexicanum_Brame.09PG006600.1.p Terpenoid CYP76 low borderline CYP76__00021__sp_Q6Z5I7_C76M6_ORYSJ
brachypodium_mexicanum_Brame.09PG006700.1.p Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
brachypodium_mexicanum_Brame.09PG006800.1.p Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
brachypodium_mexicanum_Brame.09PG007200.1.p Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
brachypodium_mexicanum_Brame.09PG023600.1.p Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
brachypodium_mexicanum_Brame.09PG030400.1.p Terpenoid CYP76 low borderline CYP76__00024__sp_W0FKI0_DOX1_PERHD
brachypodium_mexicanum_Brame.09PG075900.1.p Terpenoid CYP76 medium pass CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
brachypodium_mexicanum_Brame.09PG138600.1.p Terpenoid CYP76 low borderline CYP76__00024__sp_W0FKI0_DOX1_PERHD
brachypodium_mexicanum_Brame.09PG241400.1.p Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
brachypodium_mexicanum_Brame.09UG010700.1.p Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
brachypodium_mexicanum_Brame.09UG011100.1.p Terpenoid CYP76 low borderline CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF
brachypodium_mexicanum_Brame.09UG015500.1.p Terpenoid CYP76 low borderline CYP76__00001__sp_A0A0C5Q4Y6_C76H2_ROSOF
brachypodium_mexicanum_Brame.09UG022000.1.p Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
brachypodium_mexicanum_Brame.09UG069300.1.p Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
brachypodium_mexicanum_Brame.09UG079000.1.p Terpenoid CYP76 medium pass CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
brachypodium_mexicanum_Brame.09UG135700.1.p Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
brachypodium_mexicanum_Brame.09UG204100.1.p Terpenoid CYP76 low borderline CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
brachypodium_mexicanum_Brame.09UG242700.1.p Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
brachypodium_mexicanum_Brame.09UG269300.1.p Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
brachypodium_mexicanum_Brame.09UG301800.1.p Terpenoid CYP76 low borderline CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM
brachypodium_mexicanum_Brame.10PG064500.1.p Terpenoid CYP76 low borderline CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
brachypodium_mexicanum_Brame.10PG169600.1.p Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
brachypodium_mexicanum_Brame.10UG098700.1.p Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
brachypodium_mexicanum_Brame.10UG191800.1.p Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
brachypodium_mexicanum_Brame.U037300.1.p Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
brachypodium_mexicanum_Brame.U049400.1.p Terpenoid CYP76 low borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI
brachypodium_mexicanum_Brame.U094700.1.p Terpenoid CYP76 medium borderline CYP76__00021__sp_Q6Z5I7_C76M6_ORYSJ