PlantSME Plant secondary metabolism enzyme database

Brachypodium mexicanum (brachypodium_mexicanum)

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Imported from atlas release summary for Brachypodium mexicanum.

2781
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.8% Phenylpropanoid pathway 23.77% Alkaloid pathway 21.68% Flavonoid pathway 13.77% Rosmarinic acid pathway 7.34% Steroid pathway 5.65%
Family Distribution
BAHD 6.74% C3'H/CYP98A 5.75% C4H 5.55% POD 5.55% UGT 4.67% 7DLGT 4.52% UFGT 4.36% 4CL 3.84%
Other Families 59.03%
More Families (97)
IFS 202 3.11% CYP76 190 2.93% T3O 188 2.9% DWF4/CYP90B1 158 2.44% F3'H/CYP75B 156 2.4% NMT 153 2.36% F3H 138 2.13% BR6OX2/CYP85A2 125 1.93% STR 117 1.8% SMT1/SMT2/SMT3 113 1.74% CYP71 96 1.48% RAS 88 1.36% CSE 77 1.19% CODM/T6ODM 76 1.17% SLS 75 1.16% TRI/TRII 74 1.14% H6H 71 1.09% PYKS 71 1.09% HCT 71 1.09% LAC 71 1.09% CAD 66 1.02% PMT 62 0.96% IFR 62 0.96% SGD 58 0.89% CAS 58 0.89% T16H 56 0.86% CCR 55 0.85% TPS 50 0.77% ANR 49 0.76% GES 45 0.69% COMT 44 0.68% CYP90D1 43 0.66% FNS 42 0.65% G8O/G8H 40 0.62% PAL 39 0.6% GS 35 0.54% IO 33 0.51% 16OMT 32 0.49% CYP51G1 32 0.49% NCS 31 0.48% DFR 28 0.43% BBE 24 0.37% F5H/CYP84A 24 0.37% CPD/CYP90A1 24 0.37% CHS 23 0.35% TYDC_DDC 22 0.34% BR6OX1/CYP85A1 22 0.34% F3'5'H/CYP75A 21 0.32% 8HGO 20 0.31% TAT 18 0.28% CNMT 17 0.26% COR 17 0.26% CYP80B1 17 0.26% CCoAOMT 17 0.26% 7DLH 16 0.25% LAMT 16 0.25% ANS/LDOX 15 0.23% CPR 14 0.22% SMO1/SMO2 13 0.2% SQS/FDFT1 13 0.2% FPPS 13 0.2% GGPPS 12 0.18% AACT 11 0.17% TDC 9 0.14% HPPR 9 0.14% ROT3/CYP90C1 9 0.14% DWF1 9 0.14% MVK 9 0.14% MPO 8 0.12% MVD 8 0.12% HMGR 8 0.12% CYP719 7 0.11% CHI 7 0.11% MCT/IspD 7 0.11% FLS 6 0.09% DET2 6 0.09% PMK 6 0.09% ADC 5 0.08% IDI 5 0.08% HMGS 5 0.08% DXS 5 0.08% XMT_MXMT_DXMT 4 0.06% ODC 4 0.06% SQE 4 0.06% HDS/IspG 4 0.06% CPI1 3 0.05% DWF5 3 0.05% MDS/IspF 3 0.05% HDR/IspH 3 0.05% ISY 2 0.03% DWF7 2 0.03% HYD1 2 0.03% FK 2 0.03% DXR 2 0.03% CMK/IspE 2 0.03% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 773 19 BAHD (315) View species results
Phenylpropanoid pathway 661 11 POD (338) View species results
Alkaloid pathway 603 23 7DLGT (133) View species results
Flavonoid pathway 383 11 UFGT (256) View species results
Rosmarinic acid pathway 204 7 C4H (75) View species results
Steroid pathway 157 12 SMT1/SMT2/SMT3 (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2268 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 596 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Gene Pathway Family Confidence Status Best Target
brachypodium_mexicanum_Brame.04PG100200.1.p Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
brachypodium_mexicanum_Brame.04PG100300.1.p Terpenoid UGT medium pass UGT__00110__sp_Q9ZQ95_U73C6_ARATH
brachypodium_mexicanum_Brame.04PG100600.1.p Terpenoid UGT medium pass UGT__00045__sp_K4GKX2_73C10_BARVU
brachypodium_mexicanum_Brame.04PG100700.1.p Terpenoid UGT medium pass UGT__00045__sp_K4GKX2_73C10_BARVU
brachypodium_mexicanum_Brame.04PG101100.1.p Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
brachypodium_mexicanum_Brame.04PG102700.1.p Terpenoid UGT low borderline UGT__00054__sp_O23406_U75D1_ARATH
brachypodium_mexicanum_Brame.04PG103100.1.p Terpenoid UGT medium pass UGT__00031__sp_F8WKW0_UGT1_GARJA
brachypodium_mexicanum_Brame.04PG125600.1.p Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
brachypodium_mexicanum_Brame.04PG125800.1.p Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
brachypodium_mexicanum_Brame.04PG128200.1.p Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
brachypodium_mexicanum_Brame.04PG220400.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04PG220500.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04PG233000.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04PG233100.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04PG233200.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04PG273700.1.p Terpenoid UGT medium pass UGT__00084__sp_Q9FI99_U76C1_ARATH
brachypodium_mexicanum_Brame.04PG278600.1.p Terpenoid UGT medium pass UGT__00082__sp_Q9C9B0_U89B1_ARATH
brachypodium_mexicanum_Brame.04PG404200.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04PG404500.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04PG404700.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04UG016500.1.p Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
brachypodium_mexicanum_Brame.04UG078900.1.p Terpenoid UGT medium pass UGT__00016__sp_A0A193AUF6_GGT23_PUNGR
brachypodium_mexicanum_Brame.04UG095000.1.p Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
brachypodium_mexicanum_Brame.04UG095100.1.p Terpenoid UGT medium pass UGT__00019__sp_A0A2R4LMF9_73C25_BARVU
brachypodium_mexicanum_Brame.04UG095200.1.p Terpenoid UGT medium pass UGT__00110__sp_Q9ZQ95_U73C6_ARATH
brachypodium_mexicanum_Brame.04UG097500.1.p Terpenoid UGT low borderline UGT__00054__sp_O23406_U75D1_ARATH
brachypodium_mexicanum_Brame.04UG114300.1.p Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
brachypodium_mexicanum_Brame.04UG114400.1.p Terpenoid UGT medium pass UGT__00092__sp_Q9LNI1_U72B3_ARATH
brachypodium_mexicanum_Brame.04UG114500.1.p Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
brachypodium_mexicanum_Brame.04UG116300.1.p Terpenoid UGT low borderline UGT__00075__sp_Q7Y232_U73B4_ARATH
brachypodium_mexicanum_Brame.04UG203600.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04UG207800.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04UG207900.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04UG208600.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04UG249600.1.p Terpenoid UGT low borderline UGT__00105__sp_Q9SK82_U85A1_ARATH
brachypodium_mexicanum_Brame.04UG369800.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04UG369900.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.04UG370000.1.p Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
brachypodium_mexicanum_Brame.05PG031000.1.p Terpenoid UGT medium pass UGT__00068__sp_P0DO75_GT752_SIRGR
brachypodium_mexicanum_Brame.05PG108600.1.p Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
brachypodium_mexicanum_Brame.05PG265200.1.p Terpenoid UGT medium pass UGT__00020__sp_A3BK75_UGT83_ORYSJ
brachypodium_mexicanum_Brame.05PG279000.1.p Terpenoid UGT medium pass UGT__00074__sp_Q7XT97_UGT79_ORYSJ
brachypodium_mexicanum_Brame.05PG279300.1.p Terpenoid UGT medium pass UGT__00074__sp_Q7XT97_UGT79_ORYSJ
brachypodium_mexicanum_Brame.05PG279400.1.p Terpenoid UGT medium pass UGT__00074__sp_Q7XT97_UGT79_ORYSJ
brachypodium_mexicanum_Brame.05UG088100.1.p Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
brachypodium_mexicanum_Brame.05UG150600.1.p Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
brachypodium_mexicanum_Brame.05UG241900.1.p Terpenoid UGT medium pass UGT__00020__sp_A3BK75_UGT83_ORYSJ
brachypodium_mexicanum_Brame.05UG244400.1.p Terpenoid UGT medium pass UGT__00020__sp_A3BK75_UGT83_ORYSJ
brachypodium_mexicanum_Brame.05UG262200.1.p Terpenoid UGT medium pass UGT__00074__sp_Q7XT97_UGT79_ORYSJ
brachypodium_mexicanum_Brame.05UG262300.1.p Terpenoid UGT medium pass UGT__00074__sp_Q7XT97_UGT79_ORYSJ