Brachypodium mexicanum (brachypodium_mexicanum)
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Imported from atlas release summary for Brachypodium mexicanum.
2781
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2781
Candidate Genes
BAHD
6.74%
C3'H/CYP98A
5.75%
C4H
5.55%
POD
5.55%
UGT
4.67%
7DLGT
4.52%
UFGT
4.36%
4CL
3.84%
Other Families
59.03%
More Families (97)
IFS
202
3.11%
CYP76
190
2.93%
T3O
188
2.9%
DWF4/CYP90B1
158
2.44%
F3'H/CYP75B
156
2.4%
NMT
153
2.36%
F3H
138
2.13%
BR6OX2/CYP85A2
125
1.93%
STR
117
1.8%
SMT1/SMT2/SMT3
113
1.74%
CYP71
96
1.48%
RAS
88
1.36%
CSE
77
1.19%
CODM/T6ODM
76
1.17%
SLS
75
1.16%
TRI/TRII
74
1.14%
H6H
71
1.09%
PYKS
71
1.09%
HCT
71
1.09%
LAC
71
1.09%
CAD
66
1.02%
PMT
62
0.96%
IFR
62
0.96%
SGD
58
0.89%
CAS
58
0.89%
T16H
56
0.86%
CCR
55
0.85%
TPS
50
0.77%
ANR
49
0.76%
GES
45
0.69%
COMT
44
0.68%
CYP90D1
43
0.66%
FNS
42
0.65%
G8O/G8H
40
0.62%
PAL
39
0.6%
GS
35
0.54%
IO
33
0.51%
16OMT
32
0.49%
CYP51G1
32
0.49%
NCS
31
0.48%
DFR
28
0.43%
BBE
24
0.37%
F5H/CYP84A
24
0.37%
CPD/CYP90A1
24
0.37%
CHS
23
0.35%
TYDC_DDC
22
0.34%
BR6OX1/CYP85A1
22
0.34%
F3'5'H/CYP75A
21
0.32%
8HGO
20
0.31%
TAT
18
0.28%
CNMT
17
0.26%
COR
17
0.26%
CYP80B1
17
0.26%
CCoAOMT
17
0.26%
7DLH
16
0.25%
LAMT
16
0.25%
ANS/LDOX
15
0.23%
CPR
14
0.22%
SMO1/SMO2
13
0.2%
SQS/FDFT1
13
0.2%
FPPS
13
0.2%
GGPPS
12
0.18%
AACT
11
0.17%
TDC
9
0.14%
HPPR
9
0.14%
ROT3/CYP90C1
9
0.14%
DWF1
9
0.14%
MVK
9
0.14%
MPO
8
0.12%
MVD
8
0.12%
HMGR
8
0.12%
CYP719
7
0.11%
CHI
7
0.11%
MCT/IspD
7
0.11%
FLS
6
0.09%
DET2
6
0.09%
PMK
6
0.09%
ADC
5
0.08%
IDI
5
0.08%
HMGS
5
0.08%
DXS
5
0.08%
XMT_MXMT_DXMT
4
0.06%
ODC
4
0.06%
SQE
4
0.06%
HDS/IspG
4
0.06%
CPI1
3
0.05%
DWF5
3
0.05%
MDS/IspF
3
0.05%
HDR/IspH
3
0.05%
ISY
2
0.03%
DWF7
2
0.03%
HYD1
2
0.03%
FK
2
0.03%
DXR
2
0.03%
CMK/IspE
2
0.03%
CYP80F1
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 773 | 19 | BAHD (315) | View species results |
| Phenylpropanoid pathway | 661 | 11 | POD (338) | View species results |
| Alkaloid pathway | 603 | 23 | 7DLGT (133) | View species results |
| Flavonoid pathway | 383 | 11 | UFGT (256) | View species results |
| Rosmarinic acid pathway | 204 | 7 | C4H (75) | View species results |
| Steroid pathway | 157 | 12 | SMT1/SMT2/SMT3 (74) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2268 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 596 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| brachypodium_mexicanum_Brame.02UG070100.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG077400.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG085700.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG093100.1.p | Rosmarinic Acid | C4H | medium | pass |
| brachypodium_mexicanum_Brame.02UG153200.1.p | Rosmarinic Acid | C4H | medium | pass |
| brachypodium_mexicanum_Brame.02UG202000.1.p | Rosmarinic Acid | C4H | medium | pass |
| brachypodium_mexicanum_Brame.02UG207600.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG216600.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG243100.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG266800.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG294700.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG326000.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG338700.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG397200.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG415200.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG424100.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.02UG442900.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG056000.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG086500.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG096300.1.p | Rosmarinic Acid | C4H | medium | pass |
| brachypodium_mexicanum_Brame.03PG098300.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG112400.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG155400.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG182700.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG195800.1.p | Rosmarinic Acid | C4H | medium | pass |
| brachypodium_mexicanum_Brame.03PG196600.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG236300.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG279200.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG295500.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG296800.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG300400.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG320300.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG361200.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG369800.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03PG370300.1.p | Rosmarinic Acid | C4H | medium | pass |
| brachypodium_mexicanum_Brame.03UG013000.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG037300.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG046500.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG093600.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG102800.1.p | Rosmarinic Acid | C4H | medium | pass |
| brachypodium_mexicanum_Brame.03UG131800.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG156900.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG204200.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG204400.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG205200.1.p | Rosmarinic Acid | C4H | medium | pass |
| brachypodium_mexicanum_Brame.03UG215900.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG266600.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG269800.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG271300.1.p | Rosmarinic Acid | C4H | low | borderline |
| brachypodium_mexicanum_Brame.03UG271400.1.p | Rosmarinic Acid | C4H | low | borderline |