PlantSME Plant secondary metabolism enzyme database

Brachypodium mexicanum (brachypodium_mexicanum)

/

Imported from atlas release summary for Brachypodium mexicanum.

2781
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.8% Phenylpropanoid pathway 23.77% Alkaloid pathway 21.68% Flavonoid pathway 13.77% Rosmarinic acid pathway 7.34% Steroid pathway 5.65%
Family Distribution
BAHD 6.74% C3'H/CYP98A 5.75% C4H 5.55% POD 5.55% UGT 4.67% 7DLGT 4.52% UFGT 4.36% 4CL 3.84%
Other Families 59.03%
More Families (97)
IFS 202 3.11% CYP76 190 2.93% T3O 188 2.9% DWF4/CYP90B1 158 2.44% F3'H/CYP75B 156 2.4% NMT 153 2.36% F3H 138 2.13% BR6OX2/CYP85A2 125 1.93% STR 117 1.8% SMT1/SMT2/SMT3 113 1.74% CYP71 96 1.48% RAS 88 1.36% CSE 77 1.19% CODM/T6ODM 76 1.17% SLS 75 1.16% TRI/TRII 74 1.14% H6H 71 1.09% PYKS 71 1.09% HCT 71 1.09% LAC 71 1.09% CAD 66 1.02% PMT 62 0.96% IFR 62 0.96% SGD 58 0.89% CAS 58 0.89% T16H 56 0.86% CCR 55 0.85% TPS 50 0.77% ANR 49 0.76% GES 45 0.69% COMT 44 0.68% CYP90D1 43 0.66% FNS 42 0.65% G8O/G8H 40 0.62% PAL 39 0.6% GS 35 0.54% IO 33 0.51% 16OMT 32 0.49% CYP51G1 32 0.49% NCS 31 0.48% DFR 28 0.43% BBE 24 0.37% F5H/CYP84A 24 0.37% CPD/CYP90A1 24 0.37% CHS 23 0.35% TYDC_DDC 22 0.34% BR6OX1/CYP85A1 22 0.34% F3'5'H/CYP75A 21 0.32% 8HGO 20 0.31% TAT 18 0.28% CNMT 17 0.26% COR 17 0.26% CYP80B1 17 0.26% CCoAOMT 17 0.26% 7DLH 16 0.25% LAMT 16 0.25% ANS/LDOX 15 0.23% CPR 14 0.22% SMO1/SMO2 13 0.2% SQS/FDFT1 13 0.2% FPPS 13 0.2% GGPPS 12 0.18% AACT 11 0.17% TDC 9 0.14% HPPR 9 0.14% ROT3/CYP90C1 9 0.14% DWF1 9 0.14% MVK 9 0.14% MPO 8 0.12% MVD 8 0.12% HMGR 8 0.12% CYP719 7 0.11% CHI 7 0.11% MCT/IspD 7 0.11% FLS 6 0.09% DET2 6 0.09% PMK 6 0.09% ADC 5 0.08% IDI 5 0.08% HMGS 5 0.08% DXS 5 0.08% XMT_MXMT_DXMT 4 0.06% ODC 4 0.06% SQE 4 0.06% HDS/IspG 4 0.06% CPI1 3 0.05% DWF5 3 0.05% MDS/IspF 3 0.05% HDR/IspH 3 0.05% ISY 2 0.03% DWF7 2 0.03% HYD1 2 0.03% FK 2 0.03% DXR 2 0.03% CMK/IspE 2 0.03% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 773 19 BAHD (315) View species results
Phenylpropanoid pathway 661 11 POD (338) View species results
Alkaloid pathway 603 23 7DLGT (133) View species results
Flavonoid pathway 383 11 UFGT (256) View species results
Rosmarinic acid pathway 204 7 C4H (75) View species results
Steroid pathway 157 12 SMT1/SMT2/SMT3 (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2268 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 596 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
Reset
Gene Pathway Family Confidence Status Best Target
brachypodium_mexicanum_Brame.03UG114500.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
brachypodium_mexicanum_Brame.03UG124700.1.p Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
brachypodium_mexicanum_Brame.03UG127400.1.p Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
brachypodium_mexicanum_Brame.03UG128000.1.p Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
brachypodium_mexicanum_Brame.03UG128400.1.p Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
brachypodium_mexicanum_Brame.03UG132200.1.p Terpenoid BAHD medium pass BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
brachypodium_mexicanum_Brame.03UG146400.1.p Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
brachypodium_mexicanum_Brame.03UG196900.1.p Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
brachypodium_mexicanum_Brame.03UG201300.1.p Terpenoid BAHD medium pass BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
brachypodium_mexicanum_Brame.03UG222800.1.p Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
brachypodium_mexicanum_Brame.03UG253100.1.p Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
brachypodium_mexicanum_Brame.03UG264100.1.p Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
brachypodium_mexicanum_Brame.03UG292800.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
brachypodium_mexicanum_Brame.03UG294800.1.p Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
brachypodium_mexicanum_Brame.03UG323000.1.p Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
brachypodium_mexicanum_Brame.03UG353300.1.p Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
brachypodium_mexicanum_Brame.03UG356200.1.p Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
brachypodium_mexicanum_Brame.03UG368400.1.p Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
brachypodium_mexicanum_Brame.04PG008200.1.p Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
brachypodium_mexicanum_Brame.04PG014300.1.p Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
brachypodium_mexicanum_Brame.04PG014700.1.p Terpenoid BAHD medium pass BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
brachypodium_mexicanum_Brame.04PG025600.1.p Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
brachypodium_mexicanum_Brame.04PG025900.1.p Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
brachypodium_mexicanum_Brame.04PG026000.1.p Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
brachypodium_mexicanum_Brame.04PG062200.1.p Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
brachypodium_mexicanum_Brame.04PG083200.1.p Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
brachypodium_mexicanum_Brame.04PG217900.1.p Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
brachypodium_mexicanum_Brame.04PG255000.1.p Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
brachypodium_mexicanum_Brame.04PG274300.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
brachypodium_mexicanum_Brame.04PG299100.1.p Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
brachypodium_mexicanum_Brame.04PG303000.1.p Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
brachypodium_mexicanum_Brame.04PG322900.1.p Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
brachypodium_mexicanum_Brame.04PG330100.1.p Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
brachypodium_mexicanum_Brame.04PG337600.1.p Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
brachypodium_mexicanum_Brame.04PG341100.1.p Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
brachypodium_mexicanum_Brame.04PG364600.1.p Terpenoid BAHD medium pass BAHD__00042__sp_Q500Z2_ZDH20_ARATH
brachypodium_mexicanum_Brame.04PG366400.1.p Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
brachypodium_mexicanum_Brame.04PG407000.1.p Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
brachypodium_mexicanum_Brame.04PG427300.1.p Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
brachypodium_mexicanum_Brame.04UG006900.1.p Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
brachypodium_mexicanum_Brame.04UG011800.1.p Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
brachypodium_mexicanum_Brame.04UG022400.1.p Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
brachypodium_mexicanum_Brame.04UG075400.1.p Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
brachypodium_mexicanum_Brame.04UG075800.1.p Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
brachypodium_mexicanum_Brame.04UG232300.1.p Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
brachypodium_mexicanum_Brame.04UG250000.1.p Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
brachypodium_mexicanum_Brame.04UG273400.1.p Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
brachypodium_mexicanum_Brame.04UG275900.1.p Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
brachypodium_mexicanum_Brame.04UG278900.1.p Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
brachypodium_mexicanum_Brame.04UG296200.1.p Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH