PlantSME Plant secondary metabolism enzyme database

Brachythecium roeteanum (brachythecium_roeteanum)

Imported from atlas release summary for Brachythecium roeteanum.

664
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.11% Terpenoid pathway 25.75% Alkaloid pathway 18.67% Flavonoid pathway 13.25% Rosmarinic acid pathway 8.58% Steroid pathway 6.63%
Family Distribution
C4H 6.88% POD 5.74% C3'H/CYP98A 5.45% BAHD 5.22% CYP76 4.36% 4CL 4.13% NMT 3.84% F3H 2.47%
Other Families 61.9%
More Families (95)
IFS 42 2.41% F3'H/CYP75B 42 2.41% BR6OX2/CYP85A2 39 2.24% STR 37 2.12% DWF4/CYP90B1 37 2.12% UGT 37 2.12% 7DLGT 36 2.07% GS 36 2.07% PAL 36 2.07% T3O 35 2.01% UFGT 34 1.95% IFR 33 1.89% PYKS 29 1.66% COMT 27 1.55% IO 26 1.49% H6H 23 1.32% G8O/G8H 21 1.2% CHS 21 1.2% CODM/T6ODM 20 1.15% CAD 20 1.15% SMT1/SMT2/SMT3 20 1.15% CYP71 20 1.15% TRI/TRII 19 1.09% CAS 19 1.09% F3'5'H/CYP75A 18 1.03% CSE 17 0.98% SLS 15 0.86% 16OMT 15 0.86% LAMT 14 0.8% NCS 14 0.8% LAC 11 0.63% HCT 11 0.63% SGD 9 0.52% CYP80B1 9 0.52% BBE 9 0.52% T16H 9 0.52% RAS 9 0.52% CPD/CYP90A1 9 0.52% CYP90D1 9 0.52% 8HGO 8 0.46% BR6OX1/CYP85A1 8 0.46% COR 7 0.4% PMT 7 0.4% ANR 7 0.4% FNS 7 0.4% F5H/CYP84A 7 0.4% CCR 7 0.4% CPR 7 0.4% MPO 6 0.34% 7DLH 6 0.34% SQS/FDFT1 6 0.34% TPS 6 0.34% GGPPS 6 0.34% CNMT 5 0.29% DFR 5 0.29% AACT 5 0.29% TYDC_DDC 4 0.23% CHI 4 0.23% TAT 4 0.23% ROT3/CYP90C1 4 0.23% DWF5 4 0.23% DET2 4 0.23% MVK 4 0.23% 6OMT_4OMT_SOMT 3 0.17% TDC 3 0.17% GES 3 0.17% SQE 3 0.17% MVD 3 0.17% HDS/IspG 3 0.17% ISY 2 0.11% ADC 2 0.11% ANS/LDOX 2 0.11% FLS 2 0.11% CCoAOMT 2 0.11% SMO1/SMO2 2 0.11% IDI 2 0.11% MCT/IspD 2 0.11% FPPS 2 0.11% HDR/IspH 2 0.11% CYP719 1 0.06% XMT_MXMT_DXMT 1 0.06% HPPR 1 0.06% FK 1 0.06% DWF7 1 0.06% CYP51G1 1 0.06% DWF1 1 0.06% CPI1 1 0.06% HYD1 1 0.06% HMGS 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% DXS 1 0.06% MDS/IspF 1 0.06% DXR 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 10 POD (91) View species results
Terpenoid pathway 171 19 BAHD (63) View species results
Alkaloid pathway 124 16 NMT (27) View species results
Flavonoid pathway 88 9 UFGT (32) View species results
Rosmarinic acid pathway 57 7 C4H (22) View species results
Steroid pathway 44 13 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 649 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
Broe2082870032020 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2131940074940 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Broe2133730080540 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Broe2134780084520 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2138450099350 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2140860111680 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2140860111690 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2144920135190 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Broe2146240142780 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2146480145320 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Broe2149900164750 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Broe2150200168200 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Broe2150200168240 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Broe2156820211770 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2156820211780 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2158070220070 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2159250231660 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Broe2160770244500 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Broe2162650256410 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH