PlantSME Plant secondary metabolism enzyme database

Brachythecium roeteanum (brachythecium_roeteanum)

Imported from atlas release summary for Brachythecium roeteanum.

664
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.11% Terpenoid pathway 25.75% Alkaloid pathway 18.67% Flavonoid pathway 13.25% Rosmarinic acid pathway 8.58% Steroid pathway 6.63%
Family Distribution
C4H 6.88% POD 5.74% C3'H/CYP98A 5.45% BAHD 5.22% CYP76 4.36% 4CL 4.13% NMT 3.84% F3H 2.47%
Other Families 61.9%
More Families (95)
IFS 42 2.41% F3'H/CYP75B 42 2.41% BR6OX2/CYP85A2 39 2.24% STR 37 2.12% DWF4/CYP90B1 37 2.12% UGT 37 2.12% 7DLGT 36 2.07% GS 36 2.07% PAL 36 2.07% T3O 35 2.01% UFGT 34 1.95% IFR 33 1.89% PYKS 29 1.66% COMT 27 1.55% IO 26 1.49% H6H 23 1.32% G8O/G8H 21 1.2% CHS 21 1.2% CODM/T6ODM 20 1.15% CAD 20 1.15% SMT1/SMT2/SMT3 20 1.15% CYP71 20 1.15% TRI/TRII 19 1.09% CAS 19 1.09% F3'5'H/CYP75A 18 1.03% CSE 17 0.98% SLS 15 0.86% 16OMT 15 0.86% LAMT 14 0.8% NCS 14 0.8% LAC 11 0.63% HCT 11 0.63% SGD 9 0.52% CYP80B1 9 0.52% BBE 9 0.52% T16H 9 0.52% RAS 9 0.52% CPD/CYP90A1 9 0.52% CYP90D1 9 0.52% 8HGO 8 0.46% BR6OX1/CYP85A1 8 0.46% COR 7 0.4% PMT 7 0.4% ANR 7 0.4% FNS 7 0.4% F5H/CYP84A 7 0.4% CCR 7 0.4% CPR 7 0.4% MPO 6 0.34% 7DLH 6 0.34% SQS/FDFT1 6 0.34% TPS 6 0.34% GGPPS 6 0.34% CNMT 5 0.29% DFR 5 0.29% AACT 5 0.29% TYDC_DDC 4 0.23% CHI 4 0.23% TAT 4 0.23% ROT3/CYP90C1 4 0.23% DWF5 4 0.23% DET2 4 0.23% MVK 4 0.23% 6OMT_4OMT_SOMT 3 0.17% TDC 3 0.17% GES 3 0.17% SQE 3 0.17% MVD 3 0.17% HDS/IspG 3 0.17% ISY 2 0.11% ADC 2 0.11% ANS/LDOX 2 0.11% FLS 2 0.11% CCoAOMT 2 0.11% SMO1/SMO2 2 0.11% IDI 2 0.11% MCT/IspD 2 0.11% FPPS 2 0.11% HDR/IspH 2 0.11% CYP719 1 0.06% XMT_MXMT_DXMT 1 0.06% HPPR 1 0.06% FK 1 0.06% DWF7 1 0.06% CYP51G1 1 0.06% DWF1 1 0.06% CPI1 1 0.06% HYD1 1 0.06% HMGS 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% DXS 1 0.06% MDS/IspF 1 0.06% DXR 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 10 POD (91) View species results
Terpenoid pathway 171 19 BAHD (63) View species results
Alkaloid pathway 124 16 NMT (27) View species results
Flavonoid pathway 88 9 UFGT (32) View species results
Rosmarinic acid pathway 57 7 C4H (22) View species results
Steroid pathway 44 13 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 649 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Broe1370002930 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Broe1968930017050 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Broe2042640022600 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Broe2052330024780 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Broe2076810028610 Alkaloid NMT low borderline NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Broe2091440034370 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Broe2091450034380 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Broe2096470037670 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Broe2104620040410 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Broe2106370041350 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Broe2106370041360 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Broe2116810048100 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Broe2122570055000 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Broe2122570055010 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Broe2122570055030 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Broe2122570055040 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Broe2122650055510 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Broe2126850063160 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Broe2129060068600 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Broe2131470073620 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Broe2132080075270 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
Broe2132560076430 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Broe2133440079750 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Broe2138760100700 Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
Broe2139500104720 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Broe2140120107980 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Broe2142970122550 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Broe2143460125680 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Broe2144580132860 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Broe2146070141550 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Broe2147710150550 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Broe2148240154010 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Broe2148490155470 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Broe2150490170420 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Broe2150960173630 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
Broe2151730176770 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Broe2151860177550 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Broe2152070178400 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Broe2153060185530 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Broe2154360195900 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Broe2154360195910 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Broe2154740199070 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
Broe2154810199540 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Broe2155190201830 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Broe2155300202490 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Broe2155540204200 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Broe2157370215240 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Broe2157760218270 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Broe2158690226730 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Broe2159130230370 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH