PlantSME Plant secondary metabolism enzyme database

Buxbaumia aphylla (buxbaumia_aphylla)

Imported from atlas release summary for Buxbaumia aphylla.

751
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.1% Alkaloid pathway 25.03% Terpenoid pathway 23.7% Flavonoid pathway 9.32% Rosmarinic acid pathway 7.99% Steroid pathway 7.86%
Family Distribution
NMT 6.33% BAHD 6.09% 4CL 5.85% POD 5.66% C4H 5.24% C3'H/CYP98A 5.19% CYP76 2.9% STR 2.62%
Other Families 60.11%
More Families (96)
F3H 53 2.52% T3O 52 2.48% GS 50 2.38% IFS 49 2.33% DWF4/CYP90B1 47 2.24% BR6OX2/CYP85A2 46 2.19% F3'H/CYP75B 42 2.0% IFR 38 1.81% PYKS 37 1.76% SMT1/SMT2/SMT3 37 1.76% CYP71 33 1.57% TRI/TRII 30 1.43% CODM/T6ODM 28 1.33% H6H 27 1.29% PAL 27 1.29% CAD 26 1.24% UGT 26 1.24% CAS 24 1.14% CSE 23 1.09% 7DLGT 21 1.0% CNMT 20 0.95% CHS 20 0.95% F3'5'H/CYP75A 20 0.95% SGD 19 0.9% SLS 19 0.9% IO 17 0.81% COMT 17 0.81% UFGT 16 0.76% 8HGO 15 0.71% CPD/CYP90A1 15 0.71% HCT 14 0.67% RAS 14 0.67% T16H 13 0.62% PMT 12 0.57% FNS 12 0.57% LAC 12 0.57% AACT 12 0.57% 7DLH 11 0.52% CCR 11 0.52% DFR 10 0.48% COR 9 0.43% CPR 9 0.43% BR6OX1/CYP85A1 9 0.43% SQS/FDFT1 9 0.43% LAMT 8 0.38% CYP719 8 0.38% ANR 8 0.38% G8O/G8H 7 0.33% 16OMT 7 0.33% DWF7 7 0.33% SMO1/SMO2 7 0.33% DWF5 7 0.33% MCT/IspD 7 0.33% NCS 6 0.29% CCoAOMT 6 0.29% CYP90D1 6 0.29% GGPPS 6 0.29% TDC 5 0.24% ADC 5 0.24% 6OMT_4OMT_SOMT 5 0.24% BBE 5 0.24% TAT 5 0.24% ROT3/CYP90C1 5 0.24% DET2 5 0.24% MVK 5 0.24% FPPS 5 0.24% CYP80F1 4 0.19% CYP80B1 4 0.19% TYDC_DDC 4 0.19% CHI 4 0.19% F5H/CYP84A 4 0.19% SQE 4 0.19% HMGR 4 0.19% PMK 4 0.19% GES 3 0.14% MPO 3 0.14% FLS 3 0.14% ANS/LDOX 3 0.14% MVD 3 0.14% TPS 3 0.14% ISY 2 0.1% FK 2 0.1% HYD1 2 0.1% CPI1 2 0.1% DWF1 2 0.1% CYP51G1 2 0.1% CMK/IspE 2 0.1% IDI 2 0.1% HMGS 2 0.1% DXR 2 0.1% HDS/IspG 2 0.1% XMT_MXMT_DXMT 1 0.05% HPPR 1 0.05% DXS 1 0.05% MDS/IspF 1 0.05% HDR/IspH 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 196 11 POD (113) View species results
Alkaloid pathway 188 19 NMT (46) View species results
Terpenoid pathway 178 19 BAHD (94) View species results
Flavonoid pathway 70 7 4CL (16) View species results
Rosmarinic acid pathway 60 7 C4H (18) View species results
Steroid pathway 59 12 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 693 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 156 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
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Gene Pathway Family Confidence Status
Baphcontig_1770043950 Alkaloid SGD medium pass
Baphcontig_2430079760 Alkaloid SGD low borderline
Baphcontig_2650086470 Alkaloid SGD low borderline
Baphcontig_3550127250 Alkaloid SGD low borderline
Baphcontig_4970196290 Alkaloid SGD low borderline
Baphcontig_5260213660 Alkaloid SGD low borderline
Baphcontig_5970249670 Alkaloid SGD medium pass
Baphcontig_5970249690 Alkaloid SGD medium pass
Baphcontig_6910294840 Alkaloid SGD medium pass
Baphcontig_6960296580 Alkaloid SGD medium pass
Baphcontig_6960297130 Alkaloid SGD medium pass
Baphcontig_7000301630 Alkaloid SGD medium pass
Baphcontig_7430322900 Alkaloid SGD medium pass
Baphcontig_7530331040 Alkaloid SGD medium pass
Baphcontig_7530331060 Alkaloid SGD medium pass
Baphcontig_8010357840 Alkaloid SGD medium pass
Baphcontig_8030358530 Alkaloid SGD medium pass
Baphcontig_8410377800 Alkaloid SGD low borderline
Baphcontig_8620386100 Alkaloid SGD low borderline