PlantSME Plant secondary metabolism enzyme database

Calotropis gigantea (calotropis_gigantea)

Imported from atlas release summary for Calotropis gigantea.

1206
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.43% Alkaloid pathway 23.22% Phenylpropanoid pathway 18.91% Flavonoid pathway 13.68% Rosmarinic acid pathway 8.62% Steroid pathway 5.14%
Family Distribution
C4H 5.87% C3'H/CYP98A 5.71% BAHD 5.68% IFS 4.17% UGT 4.17% UFGT 3.97% 7DLGT 3.91% 4CL 3.84%
Other Families 62.68%
More Families (95)
CYP76 108 3.54% T3O 104 3.41% F3H 103 3.38% POD 97 3.18% NMT 75 2.46% DWF4/CYP90B1 67 2.2% H6H 65 2.13% BR6OX2/CYP85A2 62 2.03% STR 55 1.81% CYP71 50 1.64% TRI/TRII 49 1.61% CODM/T6ODM 47 1.54% F3'H/CYP75B 47 1.54% CAD 46 1.51% CAS 37 1.21% CSE 36 1.18% SMT1/SMT2/SMT3 34 1.12% TPS 34 1.12% GES 32 1.05% LAC 30 0.98% HCT 30 0.98% IFR 28 0.92% TAT 28 0.92% GS 27 0.89% FNS 26 0.85% SGD 24 0.79% RAS 24 0.79% IO 23 0.75% 7DLH 23 0.75% CYP90D1 23 0.75% PYKS 22 0.72% SLS 19 0.62% ANR 19 0.62% T16H 18 0.59% NCS 17 0.56% PMT 17 0.56% COMT 17 0.56% CCR 17 0.56% G8O/G8H 16 0.53% F3'5'H/CYP75A 16 0.53% F5H/CYP84A 16 0.53% BBE 15 0.49% CPD/CYP90A1 14 0.46% CNMT 13 0.43% COR 12 0.39% 16OMT 12 0.39% PAL 12 0.39% DFR 12 0.39% BR6OX1/CYP85A1 12 0.39% LAMT 10 0.33% 8HGO 10 0.33% CYP51G1 10 0.33% FPPS 10 0.33% MPO 9 0.3% DET2 9 0.3% DXS 8 0.26% GGPPS 8 0.26% CYP80B1 7 0.23% CYP719 7 0.23% ANS/LDOX 7 0.23% CCoAOMT 7 0.23% AACT 6 0.2% CPR 5 0.16% SQS/FDFT1 5 0.16% SQE 5 0.16% ROT3/CYP90C1 4 0.13% MVD 4 0.13% ISY 3 0.1% ADC 3 0.1% CHI 3 0.1% HPPR 3 0.1% HYD1 3 0.1% MVK 3 0.1% TYDC_DDC 2 0.07% TDC 2 0.07% 6OMT_4OMT_SOMT 2 0.07% FLS 2 0.07% CHS 2 0.07% SMO1/SMO2 2 0.07% HMGR 2 0.07% PMK 2 0.07% CMK/IspE 2 0.07% CYP80F1 1 0.03% FK 1 0.03% DWF5 1 0.03% DWF1 1 0.03% CPI1 1 0.03% DWF7 1 0.03% DXR 1 0.03% MCT/IspD 1 0.03% IDI 1 0.03% HDR/IspH 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 367 19 BAHD (136) View species results
Alkaloid pathway 280 22 7DLGT (45) View species results
Phenylpropanoid pathway 228 11 POD (90) View species results
Flavonoid pathway 165 11 UFGT (110) View species results
Rosmarinic acid pathway 104 7 C4H (37) View species results
Steroid pathway 62 12 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1127 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 227 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Cgigscaffold_00007650 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_00013490 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_110032610 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_120037570 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_190072530 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cgigscaffold_190072540 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cgigscaffold_2000086200 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_2270093140 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_240096750 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_240097990 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_280107330 Alkaloid NCS medium pass NCS__00005__sp_Q67A25_NCS_THLFG
Cgigscaffold_280107340 Alkaloid NCS medium pass NCS__00005__sp_Q67A25_NCS_THLFG
Cgigscaffold_280107350 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cgigscaffold_350127860 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cgigscaffold_350127910 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cgigscaffold_570162620 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cgigscaffold_690179790 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA