PlantSME Plant secondary metabolism enzyme database

Capparis spinosa (capparis_spinosa)

Imported from atlas release summary for Capparis spinosa.

956
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.62% Phenylpropanoid pathway 23.01% Alkaloid pathway 22.18% Flavonoid pathway 11.19% Rosmarinic acid pathway 8.47% Steroid pathway 7.53%
Family Distribution
C3'H/CYP98A 6.05% C4H 5.96% BAHD 5.7% 4CL 4.64% IFS 4.37% POD 4.28% CYP76 3.71% T3O 3.36%
Other Families 61.93%
More Families (94)
NMT 72 3.18% UGT 64 2.83% 7DLGT 63 2.78% UFGT 62 2.74% DWF4/CYP90B1 58 2.56% F3H 53 2.34% STR 50 2.21% BR6OX2/CYP85A2 47 2.08% SGD 37 1.63% CAD 37 1.63% F3'H/CYP75B 33 1.46% CAS 33 1.46% SMT1/SMT2/SMT3 32 1.41% CODM/T6ODM 31 1.37% IFR 31 1.37% H6H 30 1.33% COMT 29 1.28% PYKS 23 1.02% LAC 23 1.02% CSE 23 1.02% GES 22 0.97% TPS 22 0.97% CYP71 21 0.93% TRI/TRII 20 0.88% BBE 19 0.84% HCT 19 0.84% T16H 18 0.8% IO 18 0.8% GS 18 0.8% ANR 18 0.8% RAS 16 0.71% CYP90D1 16 0.71% 16OMT 15 0.66% LAMT 15 0.66% SLS 15 0.66% F5H/CYP84A 15 0.66% 7DLH 14 0.62% PAL 12 0.53% CCR 12 0.53% PMT 11 0.49% BR6OX1/CYP85A1 11 0.49% ROT3/CYP90C1 11 0.49% FNS 10 0.44% GGPPS 10 0.44% F3'5'H/CYP75A 9 0.4% TAT 9 0.4% SQE 9 0.4% G8O/G8H 8 0.35% 8HGO 8 0.35% FPPS 8 0.35% COR 7 0.31% CPR 7 0.31% SQS/FDFT1 7 0.31% CPD/CYP90A1 7 0.31% ANS/LDOX 6 0.27% DFR 6 0.27% CCoAOMT 6 0.27% CNMT 5 0.22% CHS 5 0.22% MVD 5 0.22% HMGR 5 0.22% MVK 5 0.22% MPO 4 0.18% CYP719 4 0.18% XMT_MXMT_DXMT 4 0.18% HPPR 4 0.18% DET2 4 0.18% CYP51G1 4 0.18% SMO1/SMO2 4 0.18% AACT 4 0.18% TDC 3 0.13% DXS 3 0.13% NCS 2 0.09% CYP80B1 2 0.09% ISY 2 0.09% ADC 2 0.09% CHI 2 0.09% FK 2 0.09% DWF7 2 0.09% DWF1 2 0.09% MCT/IspD 2 0.09% CMK/IspE 2 0.09% PMK 2 0.09% TYDC_DDC 1 0.04% FLS 1 0.04% HYD1 1 0.04% DWF5 1 0.04% CPI1 1 0.04% HDS/IspG 1 0.04% DXR 1 0.04% MDS/IspF 1 0.04% HMGS 1 0.04% IDI 1 0.04% HDR/IspH 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 264 20 BAHD (105) View species results
Phenylpropanoid pathway 220 11 POD (96) View species results
Alkaloid pathway 212 18 NMT (40) View species results
Flavonoid pathway 107 8 UFGT (61) View species results
Rosmarinic acid pathway 81 7 C4H (36) View species results
Steroid pathway 72 11 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 842 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 164 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
capparis_spinosa_Cs17G002360.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
capparis_spinosa_Cs17G002370.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
capparis_spinosa_Cs17G002430.1 Rosmarinic Acid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
capparis_spinosa_Cs18G001530.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
capparis_spinosa_Cs19G006510.1 Rosmarinic Acid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH