Capparis spinosa (capparis_spinosa)
Imported from atlas release summary for Capparis spinosa.
956
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
956
Candidate Genes
C3'H/CYP98A
6.05%
C4H
5.96%
BAHD
5.7%
4CL
4.64%
IFS
4.37%
POD
4.28%
CYP76
3.71%
T3O
3.36%
Other Families
61.93%
More Families (94)
NMT
72
3.18%
UGT
64
2.83%
7DLGT
63
2.78%
UFGT
62
2.74%
DWF4/CYP90B1
58
2.56%
F3H
53
2.34%
STR
50
2.21%
BR6OX2/CYP85A2
47
2.08%
SGD
37
1.63%
CAD
37
1.63%
F3'H/CYP75B
33
1.46%
CAS
33
1.46%
SMT1/SMT2/SMT3
32
1.41%
CODM/T6ODM
31
1.37%
IFR
31
1.37%
H6H
30
1.33%
COMT
29
1.28%
PYKS
23
1.02%
LAC
23
1.02%
CSE
23
1.02%
GES
22
0.97%
TPS
22
0.97%
CYP71
21
0.93%
TRI/TRII
20
0.88%
BBE
19
0.84%
HCT
19
0.84%
T16H
18
0.8%
IO
18
0.8%
GS
18
0.8%
ANR
18
0.8%
RAS
16
0.71%
CYP90D1
16
0.71%
16OMT
15
0.66%
LAMT
15
0.66%
SLS
15
0.66%
F5H/CYP84A
15
0.66%
7DLH
14
0.62%
PAL
12
0.53%
CCR
12
0.53%
PMT
11
0.49%
BR6OX1/CYP85A1
11
0.49%
ROT3/CYP90C1
11
0.49%
FNS
10
0.44%
GGPPS
10
0.44%
F3'5'H/CYP75A
9
0.4%
TAT
9
0.4%
SQE
9
0.4%
G8O/G8H
8
0.35%
8HGO
8
0.35%
FPPS
8
0.35%
COR
7
0.31%
CPR
7
0.31%
SQS/FDFT1
7
0.31%
CPD/CYP90A1
7
0.31%
ANS/LDOX
6
0.27%
DFR
6
0.27%
CCoAOMT
6
0.27%
CNMT
5
0.22%
CHS
5
0.22%
MVD
5
0.22%
HMGR
5
0.22%
MVK
5
0.22%
MPO
4
0.18%
CYP719
4
0.18%
XMT_MXMT_DXMT
4
0.18%
HPPR
4
0.18%
DET2
4
0.18%
CYP51G1
4
0.18%
SMO1/SMO2
4
0.18%
AACT
4
0.18%
TDC
3
0.13%
DXS
3
0.13%
NCS
2
0.09%
CYP80B1
2
0.09%
ISY
2
0.09%
ADC
2
0.09%
CHI
2
0.09%
FK
2
0.09%
DWF7
2
0.09%
DWF1
2
0.09%
MCT/IspD
2
0.09%
CMK/IspE
2
0.09%
PMK
2
0.09%
TYDC_DDC
1
0.04%
FLS
1
0.04%
HYD1
1
0.04%
DWF5
1
0.04%
CPI1
1
0.04%
HDS/IspG
1
0.04%
DXR
1
0.04%
MDS/IspF
1
0.04%
HMGS
1
0.04%
IDI
1
0.04%
HDR/IspH
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 264 | 20 | BAHD (105) | View species results |
| Phenylpropanoid pathway | 220 | 11 | POD (96) | View species results |
| Alkaloid pathway | 212 | 18 | NMT (40) | View species results |
| Flavonoid pathway | 107 | 8 | UFGT (61) | View species results |
| Rosmarinic acid pathway | 81 | 7 | C4H (36) | View species results |
| Steroid pathway | 72 | 11 | CAS (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 842 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 164 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| capparis_spinosa_Cs02G001290.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs04G002680.1 | Alkaloid | IO | high | pass |
| capparis_spinosa_Cs04G006780.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs05G008450.1 | Alkaloid | IO | low | borderline |
| capparis_spinosa_Cs06G001400.1 | Alkaloid | IO | medium | pass |
| capparis_spinosa_Cs06G001410.1 | Alkaloid | IO | medium | pass |
| capparis_spinosa_Cs07G001440.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs07G006150.1 | Alkaloid | IO | low | borderline |
| capparis_spinosa_Cs08G001500.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs08G006210.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs12G000770.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs12G003880.1 | Alkaloid | IO | low | borderline |
| capparis_spinosa_Cs13G012550.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs18G003640.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs18G005430.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs19G006000.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs20G000480.1 | Alkaloid | IO | low | borderline |
| capparis_spinosa_Cs20G002560.1 | Alkaloid | IO | medium | borderline |