Capparis spinosa (capparis_spinosa)
Imported from atlas release summary for Capparis spinosa.
1144
Candidate Protein Records
956
Pathway-Level Records
2264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2264
Family-Level Calls
C3'H/CYP98A
6.05%
C4H
5.96%
BAHD
5.7%
4CL
4.64%
IFS
4.37%
POD
4.28%
CYP76
3.71%
T3O
3.36%
Other Families
61.93%
More Families (94)
NMT
72
3.18%
UGT
64
2.83%
7DLGT
63
2.78%
UFGT
62
2.74%
DWF4/CYP90B1
58
2.56%
F3H
53
2.34%
STR
50
2.21%
BR6OX2/CYP85A2
47
2.08%
SGD
37
1.63%
CAD
37
1.63%
F3'H/CYP75B
33
1.46%
CAS
33
1.46%
SMT1/SMT2/SMT3
32
1.41%
CODM/T6ODM
31
1.37%
IFR
31
1.37%
H6H
30
1.33%
COMT
29
1.28%
PYKS
23
1.02%
LAC
23
1.02%
CSE
23
1.02%
GES
22
0.97%
TPS
22
0.97%
CYP71
21
0.93%
TRI/TRII
20
0.88%
BBE
19
0.84%
HCT
19
0.84%
T16H
18
0.8%
IO
18
0.8%
GS
18
0.8%
ANR
18
0.8%
RAS
16
0.71%
CYP90D1
16
0.71%
16OMT
15
0.66%
LAMT
15
0.66%
SLS
15
0.66%
F5H/CYP84A
15
0.66%
7DLH
14
0.62%
PAL
12
0.53%
CCR
12
0.53%
PMT
11
0.49%
BR6OX1/CYP85A1
11
0.49%
ROT3/CYP90C1
11
0.49%
FNS
10
0.44%
GGPPS
10
0.44%
F3'5'H/CYP75A
9
0.4%
TAT
9
0.4%
SQE
9
0.4%
G8O/G8H
8
0.35%
8HGO
8
0.35%
FPPS
8
0.35%
COR
7
0.31%
CPR
7
0.31%
SQS/FDFT1
7
0.31%
CPD/CYP90A1
7
0.31%
ANS/LDOX
6
0.27%
DFR
6
0.27%
CCoAOMT
6
0.27%
CNMT
5
0.22%
CHS
5
0.22%
MVD
5
0.22%
HMGR
5
0.22%
MVK
5
0.22%
MPO
4
0.18%
CYP719
4
0.18%
XMT_MXMT_DXMT
4
0.18%
HPPR
4
0.18%
DET2
4
0.18%
CYP51G1
4
0.18%
SMO1/SMO2
4
0.18%
AACT
4
0.18%
TDC
3
0.13%
DXS
3
0.13%
NCS
2
0.09%
CYP80B1
2
0.09%
ISY
2
0.09%
ADC
2
0.09%
CHI
2
0.09%
FK
2
0.09%
DWF7
2
0.09%
DWF1
2
0.09%
MCT/IspD
2
0.09%
CMK/IspE
2
0.09%
PMK
2
0.09%
TYDC_DDC
1
0.04%
FLS
1
0.04%
HYD1
1
0.04%
DWF5
1
0.04%
CPI1
1
0.04%
HDS/IspG
1
0.04%
DXR
1
0.04%
MDS/IspF
1
0.04%
HMGS
1
0.04%
IDI
1
0.04%
HDR/IspH
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 264 | 20 | BAHD (105) | View species results |
| Phenylpropanoid pathway | 220 | 11 | POD (96) | View species results |
| Alkaloid pathway | 212 | 18 | NMT (40) | View species results |
| Flavonoid pathway | 107 | 8 | UFGT (61) | View species results |
| Rosmarinic acid pathway | 81 | 7 | C4H (36) | View species results |
| Steroid pathway | 72 | 11 | CAS (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 842 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 164 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| capparis_spinosa_Cs04G006780.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs05G008450.1 | Alkaloid | IO | low | borderline |
| capparis_spinosa_Cs06G001400.1 | Alkaloid | IO | medium | pass |
| capparis_spinosa_Cs06G001410.1 | Alkaloid | IO | medium | pass |
| capparis_spinosa_Cs07G001440.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs07G006150.1 | Alkaloid | IO | low | borderline |
| capparis_spinosa_Cs08G001500.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs08G006210.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs12G000770.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs12G003880.1 | Alkaloid | IO | low | borderline |
| capparis_spinosa_Cs13G012550.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs18G003640.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs18G005430.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs19G006000.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs20G000480.1 | Alkaloid | IO | low | borderline |
| capparis_spinosa_Cs20G002560.1 | Alkaloid | IO | medium | borderline |
| capparis_spinosa_Cs03G002850.1 | Alkaloid | ISY | medium | pass |
| capparis_spinosa_Cs13G005480.1 | Alkaloid | ISY | low | borderline |
| capparis_spinosa_Cs02G003470.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs02G003510.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs02G003650.1 | Alkaloid | LAMT | medium | pass |
| capparis_spinosa_Cs03G004240.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs04G000660.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs05G004930.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs06G008910.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs07G004810.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs07G005830.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs08G005570.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs08G005660.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs08G008450.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs14G005950.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs15G009360.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs16G007580.1 | Alkaloid | LAMT | medium | borderline |
| capparis_spinosa_Cs01G013630.1 | Alkaloid | MPO | low | borderline |
| capparis_spinosa_Cs02G010870.1 | Alkaloid | MPO | medium | pass |
| capparis_spinosa_Cs06G004040.1 | Alkaloid | MPO | high | pass |
| capparis_spinosa_Cs18G000570.1 | Alkaloid | MPO | medium | pass |
| capparis_spinosa_Cs01G001650.1 | Alkaloid | NCS | medium | borderline |
| capparis_spinosa_Cs01G006100.1 | Alkaloid | NCS | medium | borderline |
| capparis_spinosa_Cs01G000670.1 | Alkaloid | NMT | medium | pass |
| capparis_spinosa_Cs01G000680.1 | Alkaloid | NMT | low | borderline |
| capparis_spinosa_Cs01G000700.1 | Alkaloid | NMT | medium | pass |
| capparis_spinosa_Cs01G000710.1 | Alkaloid | NMT | medium | borderline |
| capparis_spinosa_Cs01G010410.1 | Alkaloid | NMT | medium | pass |
| capparis_spinosa_Cs01G011540.1 | Alkaloid | NMT | medium | pass |
| capparis_spinosa_Cs01G014410.1 | Alkaloid | NMT | medium | pass |
| capparis_spinosa_Cs02G002340.1 | Alkaloid | NMT | medium | borderline |
| capparis_spinosa_Cs02G006380.1 | Alkaloid | NMT | medium | pass |
| capparis_spinosa_Cs02G009680.1 | Alkaloid | NMT | medium | pass |
| capparis_spinosa_Cs03G001590.1 | Alkaloid | NMT | medium | borderline |