PlantSME Plant secondary metabolism enzyme database

Capsella rubella (capsella_rubella)

Imported from atlas release summary for Capsella rubella.

1403
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (176) View species results
Alkaloid pathway 318 18 7DLGT (51) View species results
Phenylpropanoid pathway 291 11 POD (131) View species results
Flavonoid pathway 171 7 UFGT (118) View species results
Rosmarinic acid pathway 108 7 C4H (44) View species results
Steroid pathway 89 12 SMT1/SMT2/SMT3 (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1385 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 263 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
Reset
Gene Pathway Family Confidence Status
Crubscaffold_60195560.1 Terpenoid CYP76 medium borderline
Crubscaffold_60196390.1 Terpenoid CYP76 low borderline
Crubscaffold_60196610.1 Terpenoid CYP76 low borderline
Crubscaffold_60198530.1 Terpenoid CYP76 low borderline
Crubscaffold_60200190.1 Terpenoid CYP76 medium borderline
Crubscaffold_60200200.1 Terpenoid CYP76 medium pass
Crubscaffold_60202760.1 Terpenoid CYP76 medium pass
Crubscaffold_60204150.1 Terpenoid CYP76 medium borderline
Crubscaffold_60204160.1 Terpenoid CYP76 medium borderline
Crubscaffold_60204170.1 Terpenoid CYP76 medium borderline
Crubscaffold_60204180.1 Terpenoid CYP76 medium borderline
Crubscaffold_60204200.1 Terpenoid CYP76 medium borderline
Crubscaffold_60204210.1 Terpenoid CYP76 medium borderline
Crubscaffold_60208410.1 Terpenoid CYP76 medium pass
Crubscaffold_60209600.1 Terpenoid CYP76 low borderline
Crubscaffold_70210870.1 Terpenoid CYP76 medium borderline
Crubscaffold_70211910.1 Terpenoid CYP76 low borderline
Crubscaffold_70212580.1 Terpenoid CYP76 medium borderline
Crubscaffold_70212890.1 Terpenoid CYP76 medium borderline
Crubscaffold_70212910.1 Terpenoid CYP76 medium pass
Crubscaffold_70212920.1 Terpenoid CYP76 medium borderline
Crubscaffold_70212950.1 Terpenoid CYP76 medium pass
Crubscaffold_70212960.1 Terpenoid CYP76 medium pass
Crubscaffold_70212980.1 Terpenoid CYP76 medium pass
Crubscaffold_70212990.1 Terpenoid CYP76 medium pass
Crubscaffold_70214040.1 Terpenoid CYP76 medium borderline
Crubscaffold_70218620.1 Terpenoid CYP76 medium borderline
Crubscaffold_70228640.1 Terpenoid CYP76 medium pass
Crubscaffold_70228650.1 Terpenoid CYP76 medium pass
Crubscaffold_70230940.1 Terpenoid CYP76 medium borderline
Crubscaffold_70236550.1 Terpenoid CYP76 medium borderline
Crubscaffold_70236900.1 Terpenoid CYP76 low borderline
Crubscaffold_70238710.1 Terpenoid CYP76 medium borderline
Crubscaffold_70241910.1 Terpenoid CYP76 medium pass
Crubscaffold_70247020.1 Terpenoid CYP76 low borderline
Crubscaffold_80251710.1 Terpenoid CYP76 medium borderline
Crubscaffold_80251730.1 Terpenoid CYP76 medium borderline
Crubscaffold_80251750.1 Terpenoid CYP76 medium borderline
Crubscaffold_80252090.1 Terpenoid CYP76 medium borderline
Crubscaffold_80260540.1 Terpenoid CYP76 low borderline
Crubscaffold_80275230.1 Terpenoid CYP76 medium borderline