PlantSME Plant secondary metabolism enzyme database

Capsella rubella (capsella_rubella)

Imported from atlas release summary for Capsella rubella.

1403
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.36% Alkaloid pathway 22.67% Phenylpropanoid pathway 20.74% Flavonoid pathway 12.19% Rosmarinic acid pathway 7.7% Steroid pathway 6.34%
Family Distribution
C4H 6.23% C3'H/CYP98A 6.17% BAHD 6.15% CYP76 4.03% POD 3.89% IFS 3.86% 4CL 3.77% UFGT 3.6%
Other Families 62.29%
More Families (95)
UGT 125 3.57% 7DLGT 123 3.52% T3O 118 3.37% F3H 105 3.0% DWF4/CYP90B1 91 2.6% NMT 86 2.46% F3'H/CYP75B 71 2.03% SMT1/SMT2/SMT3 66 1.89% CODM/T6ODM 65 1.86% STR 63 1.8% BR6OX2/CYP85A2 62 1.77% CYP71 57 1.63% CSE 49 1.4% SGD 48 1.37% TRI/TRII 47 1.34% H6H 41 1.17% IFR 37 1.06% T16H 36 1.03% CAD 36 1.03% GES 35 1.0% CAS 35 1.0% TPS 34 0.97% BBE 29 0.83% CYP90D1 29 0.83% LAC 27 0.77% F5H/CYP84A 26 0.74% SLS 25 0.71% HCT 25 0.71% PYKS 24 0.69% ANR 24 0.69% RAS 23 0.66% TAT 22 0.63% LAMT 21 0.6% CCR 21 0.6% IO 20 0.57% CYP51G1 20 0.57% BR6OX1/CYP85A1 20 0.57% G8O/G8H 18 0.51% GS 18 0.51% FNS 18 0.51% COMT 18 0.51% F3'5'H/CYP75A 17 0.49% 16OMT 16 0.46% CPD/CYP90A1 16 0.46% 7DLH 14 0.4% ROT3/CYP90C1 14 0.4% PMT 13 0.37% NCS 12 0.34% 8HGO 11 0.31% SQE 11 0.31% GGPPS 11 0.31% FPPS 11 0.31% CNMT 10 0.29% COR 10 0.29% PAL 9 0.26% CYP80B1 8 0.23% ANS/LDOX 8 0.23% AACT 8 0.23% CYP80F1 7 0.2% MPO 7 0.2% DFR 7 0.2% SMO1/SMO2 7 0.2% CYP719 6 0.17% TYDC_DDC 6 0.17% CCoAOMT 6 0.17% CPR 6 0.17% SQS/FDFT1 5 0.14% MCT/IspD 5 0.14% MVK 5 0.14% ISY 4 0.11% CHI 4 0.11% MVD 4 0.11% DXS 4 0.11% CHS 3 0.09% HPPR 3 0.09% DWF7 3 0.09% DET2 3 0.09% HMGR 3 0.09% CMK/IspE 3 0.09% XMT_MXMT_DXMT 2 0.06% TDC 2 0.06% ADC 2 0.06% HDR/IspH 2 0.06% IDI 2 0.06% FLS 1 0.03% HYD1 1 0.03% DWF5 1 0.03% DWF1 1 0.03% FK 1 0.03% CPI1 1 0.03% PMK 1 0.03% MDS/IspF 1 0.03% HMGS 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (176) View species results
Alkaloid pathway 318 18 7DLGT (51) View species results
Phenylpropanoid pathway 291 11 POD (131) View species results
Flavonoid pathway 171 7 UFGT (118) View species results
Rosmarinic acid pathway 108 7 C4H (44) View species results
Steroid pathway 89 12 SMT1/SMT2/SMT3 (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1385 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 263 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Crubscaffold_30084920.1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Crubscaffold_40130200.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Crubscaffold_50162200.1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Crubscaffold_30084920.1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Crubscaffold_40130200.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Crubscaffold_50162200.1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Crubscaffold_30084920.1 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Crubscaffold_40130200.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Crubscaffold_50162200.1 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH