Capsella rubella (capsella_rubella)
Imported from atlas release summary for Capsella rubella.
1403
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1403
Candidate Genes
C4H
6.23%
C3'H/CYP98A
6.17%
BAHD
6.15%
CYP76
4.03%
POD
3.89%
IFS
3.86%
4CL
3.77%
UFGT
3.6%
Other Families
62.29%
More Families (95)
UGT
125
3.57%
7DLGT
123
3.52%
T3O
118
3.37%
F3H
105
3.0%
DWF4/CYP90B1
91
2.6%
NMT
86
2.46%
F3'H/CYP75B
71
2.03%
SMT1/SMT2/SMT3
66
1.89%
CODM/T6ODM
65
1.86%
STR
63
1.8%
BR6OX2/CYP85A2
62
1.77%
CYP71
57
1.63%
CSE
49
1.4%
SGD
48
1.37%
TRI/TRII
47
1.34%
H6H
41
1.17%
IFR
37
1.06%
T16H
36
1.03%
CAD
36
1.03%
GES
35
1.0%
CAS
35
1.0%
TPS
34
0.97%
BBE
29
0.83%
CYP90D1
29
0.83%
LAC
27
0.77%
F5H/CYP84A
26
0.74%
SLS
25
0.71%
HCT
25
0.71%
PYKS
24
0.69%
ANR
24
0.69%
RAS
23
0.66%
TAT
22
0.63%
LAMT
21
0.6%
CCR
21
0.6%
IO
20
0.57%
CYP51G1
20
0.57%
BR6OX1/CYP85A1
20
0.57%
G8O/G8H
18
0.51%
GS
18
0.51%
FNS
18
0.51%
COMT
18
0.51%
F3'5'H/CYP75A
17
0.49%
16OMT
16
0.46%
CPD/CYP90A1
16
0.46%
7DLH
14
0.4%
ROT3/CYP90C1
14
0.4%
PMT
13
0.37%
NCS
12
0.34%
8HGO
11
0.31%
SQE
11
0.31%
GGPPS
11
0.31%
FPPS
11
0.31%
CNMT
10
0.29%
COR
10
0.29%
PAL
9
0.26%
CYP80B1
8
0.23%
ANS/LDOX
8
0.23%
AACT
8
0.23%
CYP80F1
7
0.2%
MPO
7
0.2%
DFR
7
0.2%
SMO1/SMO2
7
0.2%
CYP719
6
0.17%
TYDC_DDC
6
0.17%
CCoAOMT
6
0.17%
CPR
6
0.17%
SQS/FDFT1
5
0.14%
MCT/IspD
5
0.14%
MVK
5
0.14%
ISY
4
0.11%
CHI
4
0.11%
MVD
4
0.11%
DXS
4
0.11%
CHS
3
0.09%
HPPR
3
0.09%
DWF7
3
0.09%
DET2
3
0.09%
HMGR
3
0.09%
CMK/IspE
3
0.09%
XMT_MXMT_DXMT
2
0.06%
TDC
2
0.06%
ADC
2
0.06%
HDR/IspH
2
0.06%
IDI
2
0.06%
FLS
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
HMGS
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 426 | 19 | BAHD (176) | View species results |
| Alkaloid pathway | 318 | 18 | 7DLGT (51) | View species results |
| Phenylpropanoid pathway | 291 | 11 | POD (131) | View species results |
| Flavonoid pathway | 171 | 7 | UFGT (118) | View species results |
| Rosmarinic acid pathway | 108 | 7 | C4H (44) | View species results |
| Steroid pathway | 89 | 12 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1385 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 263 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Crubscaffold_40114200.3 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Crubscaffold_40114950.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Crubscaffold_40124230.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Crubscaffold_40126190.1 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| Crubscaffold_40128130.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Crubscaffold_40129830.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Crubscaffold_40137980.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Crubscaffold_50169090.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Crubscaffold_50170880.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Crubscaffold_5490172610.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Crubscaffold_60176620.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Crubscaffold_60180940.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Crubscaffold_60180940.2 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Crubscaffold_60184630.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Crubscaffold_60184890.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Crubscaffold_60194890.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Crubscaffold_60204690.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Crubscaffold_60207950.1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| Crubscaffold_70214250.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Crubscaffold_70214250.2 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Crubscaffold_70218680.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Crubscaffold_70219430.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Crubscaffold_70219710.1 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Crubscaffold_70221060.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Crubscaffold_70222930.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Crubscaffold_70234850.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Crubscaffold_70239110.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Crubscaffold_80248640.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Crubscaffold_80248650.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Crubscaffold_80248650.2 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Crubscaffold_80252080.1 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Crubscaffold_80252600.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Crubscaffold_80254640.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Crubscaffold_80254800.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Crubscaffold_80256880.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Crubscaffold_80261630.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |