Capsella rubella (capsella_rubella)
Imported from atlas release summary for Capsella rubella.
1696
Candidate Protein Records
1403
Pathway-Level Records
3498
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3498
Family-Level Calls
C4H
6.23%
C3'H/CYP98A
6.17%
BAHD
6.15%
CYP76
4.03%
POD
3.89%
IFS
3.86%
4CL
3.77%
UFGT
3.6%
Other Families
62.29%
More Families (95)
UGT
125
3.57%
7DLGT
123
3.52%
T3O
118
3.37%
F3H
105
3.0%
DWF4/CYP90B1
91
2.6%
NMT
86
2.46%
F3'H/CYP75B
71
2.03%
SMT1/SMT2/SMT3
66
1.89%
CODM/T6ODM
65
1.86%
STR
63
1.8%
BR6OX2/CYP85A2
62
1.77%
CYP71
57
1.63%
CSE
49
1.4%
SGD
48
1.37%
TRI/TRII
47
1.34%
H6H
41
1.17%
IFR
37
1.06%
T16H
36
1.03%
CAD
36
1.03%
GES
35
1.0%
CAS
35
1.0%
TPS
34
0.97%
BBE
29
0.83%
CYP90D1
29
0.83%
LAC
27
0.77%
F5H/CYP84A
26
0.74%
SLS
25
0.71%
HCT
25
0.71%
PYKS
24
0.69%
ANR
24
0.69%
RAS
23
0.66%
TAT
22
0.63%
LAMT
21
0.6%
CCR
21
0.6%
IO
20
0.57%
CYP51G1
20
0.57%
BR6OX1/CYP85A1
20
0.57%
G8O/G8H
18
0.51%
GS
18
0.51%
FNS
18
0.51%
COMT
18
0.51%
F3'5'H/CYP75A
17
0.49%
16OMT
16
0.46%
CPD/CYP90A1
16
0.46%
7DLH
14
0.4%
ROT3/CYP90C1
14
0.4%
PMT
13
0.37%
NCS
12
0.34%
8HGO
11
0.31%
SQE
11
0.31%
GGPPS
11
0.31%
FPPS
11
0.31%
CNMT
10
0.29%
COR
10
0.29%
PAL
9
0.26%
CYP80B1
8
0.23%
ANS/LDOX
8
0.23%
AACT
8
0.23%
CYP80F1
7
0.2%
MPO
7
0.2%
DFR
7
0.2%
SMO1/SMO2
7
0.2%
CYP719
6
0.17%
TYDC_DDC
6
0.17%
CCoAOMT
6
0.17%
CPR
6
0.17%
SQS/FDFT1
5
0.14%
MCT/IspD
5
0.14%
MVK
5
0.14%
ISY
4
0.11%
CHI
4
0.11%
MVD
4
0.11%
DXS
4
0.11%
CHS
3
0.09%
HPPR
3
0.09%
DWF7
3
0.09%
DET2
3
0.09%
HMGR
3
0.09%
CMK/IspE
3
0.09%
XMT_MXMT_DXMT
2
0.06%
TDC
2
0.06%
ADC
2
0.06%
HDR/IspH
2
0.06%
IDI
2
0.06%
FLS
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
HMGS
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 426 | 19 | BAHD (176) | View species results |
| Alkaloid pathway | 318 | 18 | 7DLGT (51) | View species results |
| Phenylpropanoid pathway | 291 | 11 | POD (131) | View species results |
| Flavonoid pathway | 171 | 7 | UFGT (118) | View species results |
| Rosmarinic acid pathway | 108 | 7 | C4H (44) | View species results |
| Steroid pathway | 89 | 12 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1385 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 263 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Crubscaffold_40130540.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_40132670.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_40134870.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_40135250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50142690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50142690.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50145850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50151130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50153110.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50160200.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50160220.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50160230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50161070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50161070.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50162450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50162490.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50164120.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50164130.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50164140.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50164170.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_50166160.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50166170.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50166180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50166190.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50166200.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50166210.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50166230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_50168660.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_60178150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_60184480.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_60190490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_60192400.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Crubscaffold_70223470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_70225230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_80261060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_80269460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Crubscaffold_10000940.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_10011240.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| Crubscaffold_10026910.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_10038890.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_1300045600.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_1300045610.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_30078010.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_30095410.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_30095420.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_30095430.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_30095440.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_30095450.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| Crubscaffold_30100910.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| Crubscaffold_40118760.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |