Capsicum annuum (capsicum_annuum)
Imported from atlas release summary for Capsicum annuum.
1585
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1585
Candidate Genes
C4H
8.3%
C3'H/CYP98A
7.5%
CYP76
4.71%
T3O
4.47%
IFS
4.17%
4CL
3.71%
BAHD
3.37%
F3'H/CYP75B
3.33%
Other Families
60.45%
More Families (96)
F3H
160
3.19%
POD
159
3.17%
DWF4/CYP90B1
145
2.89%
BR6OX2/CYP85A2
128
2.55%
NMT
104
2.07%
H6H
99
1.97%
CYP71
96
1.91%
TPS
96
1.91%
CODM/T6ODM
94
1.87%
STR
89
1.78%
GES
80
1.6%
UGT
79
1.58%
CAD
70
1.4%
SMT1/SMT2/SMT3
68
1.36%
COMT
60
1.2%
BBE
56
1.12%
IO
56
1.12%
T16H
55
1.1%
TRI/TRII
54
1.08%
G8O/G8H
51
1.02%
F5H/CYP84A
50
1.0%
CYP90D1
50
1.0%
7DLH
47
0.94%
F3'5'H/CYP75A
45
0.9%
CSE
45
0.9%
LAC
45
0.9%
CAS
45
0.9%
16OMT
43
0.86%
PYKS
37
0.74%
FNS
37
0.74%
SLS
35
0.7%
LAMT
33
0.66%
7DLGT
31
0.62%
GS
31
0.62%
SGD
31
0.62%
IFR
30
0.6%
CYP51G1
30
0.6%
BR6OX1/CYP85A1
30
0.6%
PAL
27
0.54%
CPD/CYP90A1
26
0.52%
UFGT
22
0.44%
TAT
22
0.44%
CCR
20
0.4%
NCS
19
0.38%
CNMT
19
0.38%
ANR
19
0.38%
8HGO
17
0.34%
CYP80B1
14
0.28%
DFR
14
0.28%
ANS/LDOX
14
0.28%
CHS
14
0.28%
FPPS
14
0.28%
TYDC_DDC
13
0.26%
ROT3/CYP90C1
13
0.26%
6OMT_4OMT_SOMT
12
0.24%
HPPR
12
0.24%
HMGR
12
0.24%
AACT
12
0.24%
MPO
11
0.22%
CCoAOMT
11
0.22%
COR
10
0.2%
PMT
10
0.2%
GGPPS
10
0.2%
FLS
9
0.18%
RAS
9
0.18%
CPR
9
0.18%
SQS/FDFT1
8
0.16%
HMGS
8
0.16%
ISY
7
0.14%
CYP719
7
0.14%
SQE
7
0.14%
XMT_MXMT_DXMT
6
0.12%
SMO1/SMO2
6
0.12%
DET2
6
0.12%
CHI
5
0.1%
HDS/IspG
5
0.1%
HDR/IspH
5
0.1%
ODC
4
0.08%
TDC
4
0.08%
DXS
4
0.08%
MVK
4
0.08%
MVD
4
0.08%
ADC
3
0.06%
HCT
3
0.06%
DWF1
3
0.06%
HYD1
3
0.06%
PMK
3
0.06%
CMK/IspE
3
0.06%
IDI
3
0.06%
MCT/IspD
3
0.06%
DWF5
2
0.04%
DWF7
2
0.04%
CPI1
2
0.04%
FK
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 436 | 19 | BAHD (130) | View species results |
| Phenylpropanoid pathway | 377 | 12 | POD (148) | View species results |
| Alkaloid pathway | 368 | 27 | GES (74) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (102) | View species results |
| Steroid pathway | 108 | 13 | SMT1/SMT2/SMT3 (47) | View species results |
| Flavonoid pathway | 105 | 12 | 4CL (42) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2506 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 181 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cann01G0032760.1 | Alkaloid | PYKS | high | pass |
| Cann02G0001430.1 | Alkaloid | PYKS | low | borderline |
| Cann02G0024330.1 | Alkaloid | PYKS | low | borderline |
| Cann03G0003060.1 | Alkaloid | PYKS | high | pass |
| Cann03G0006470.1 | Alkaloid | PYKS | low | borderline |
| Cann03G0025960.1 | Alkaloid | PYKS | low | borderline |
| Cann04G0000120.1 | Alkaloid | PYKS | low | borderline |
| Cann04G0000130.1 | Alkaloid | PYKS | low | borderline |
| Cann04G0022130.1 | Alkaloid | PYKS | low | borderline |
| Cann05G0016480.1 | Alkaloid | PYKS | high | pass |
| Cann05G0016490.1 | Alkaloid | PYKS | medium | pass |
| Cann05G0016790.1 | Alkaloid | PYKS | high | pass |
| Cann05G0017600.1 | Alkaloid | PYKS | high | pass |
| Cann06G0004210.1 | Alkaloid | PYKS | low | borderline |
| Cann06G0011340.1 | Alkaloid | PYKS | low | borderline |
| Cann06G0015340.1 | Alkaloid | PYKS | low | borderline |
| Cann06G0028670.1 | Alkaloid | PYKS | low | borderline |
| Cann08G0005490.1 | Alkaloid | PYKS | low | borderline |
| Cann08G0005600.1 | Alkaloid | PYKS | low | borderline |
| Cann09G0018040.1 | Alkaloid | PYKS | low | borderline |
| Cann10G0004780.1 | Alkaloid | PYKS | low | borderline |
| Cann11G0001800.1 | Alkaloid | PYKS | low | borderline |
| Cann11G0001810.1 | Alkaloid | PYKS | low | borderline |
| Cann11G0005550.1 | Alkaloid | PYKS | low | borderline |
| Cann11G0016280.1 | Alkaloid | PYKS | low | borderline |
| Cann11G0016310.1 | Alkaloid | PYKS | low | borderline |
| Cann12G0016100.1 | Alkaloid | PYKS | low | borderline |
| Cann12G0022520.1 | Alkaloid | PYKS | medium | pass |
| Cann12G0022530.1 | Alkaloid | PYKS | high | pass |
| Cann12G0022540.1 | Alkaloid | PYKS | high | pass |
| Cann12G0022710.1 | Alkaloid | PYKS | medium | pass |
| Cann12G0022720.1 | Alkaloid | PYKS | medium | pass |
| Cann12G0022730.1 | Alkaloid | PYKS | high | pass |
| CannPGAv.1.6.scaffold12890008710.1 | Alkaloid | PYKS | low | borderline |
| CannPGAv.1.6.scaffold2850026030.1 | Alkaloid | PYKS | low | borderline |
| CannPGAv.1.6.scaffold5880033470.1 | Alkaloid | PYKS | high | pass |
| CannPGAv.1.6.scaffold5880034400.1 | Alkaloid | PYKS | medium | pass |