PlantSME Plant secondary metabolism enzyme database

Capsicum annuum (capsicum_annuum)

Imported from atlas release summary for Capsicum annuum.

1585
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.51% Phenylpropanoid pathway 23.79% Alkaloid pathway 23.22% Rosmarinic acid pathway 12.05% Steroid pathway 6.81% Flavonoid pathway 6.62%
Family Distribution
C4H 8.3% C3'H/CYP98A 7.5% CYP76 4.71% T3O 4.47% IFS 4.17% 4CL 3.71% BAHD 3.37% F3'H/CYP75B 3.33%
Other Families 60.45%
More Families (96)
F3H 160 3.19% POD 159 3.17% DWF4/CYP90B1 145 2.89% BR6OX2/CYP85A2 128 2.55% NMT 104 2.07% H6H 99 1.97% CYP71 96 1.91% TPS 96 1.91% CODM/T6ODM 94 1.87% STR 89 1.78% GES 80 1.6% UGT 79 1.58% CAD 70 1.4% SMT1/SMT2/SMT3 68 1.36% COMT 60 1.2% BBE 56 1.12% IO 56 1.12% T16H 55 1.1% TRI/TRII 54 1.08% G8O/G8H 51 1.02% F5H/CYP84A 50 1.0% CYP90D1 50 1.0% 7DLH 47 0.94% F3'5'H/CYP75A 45 0.9% CSE 45 0.9% LAC 45 0.9% CAS 45 0.9% 16OMT 43 0.86% PYKS 37 0.74% FNS 37 0.74% SLS 35 0.7% LAMT 33 0.66% 7DLGT 31 0.62% GS 31 0.62% SGD 31 0.62% IFR 30 0.6% CYP51G1 30 0.6% BR6OX1/CYP85A1 30 0.6% PAL 27 0.54% CPD/CYP90A1 26 0.52% UFGT 22 0.44% TAT 22 0.44% CCR 20 0.4% NCS 19 0.38% CNMT 19 0.38% ANR 19 0.38% 8HGO 17 0.34% CYP80B1 14 0.28% DFR 14 0.28% ANS/LDOX 14 0.28% CHS 14 0.28% FPPS 14 0.28% TYDC_DDC 13 0.26% ROT3/CYP90C1 13 0.26% 6OMT_4OMT_SOMT 12 0.24% HPPR 12 0.24% HMGR 12 0.24% AACT 12 0.24% MPO 11 0.22% CCoAOMT 11 0.22% COR 10 0.2% PMT 10 0.2% GGPPS 10 0.2% FLS 9 0.18% RAS 9 0.18% CPR 9 0.18% SQS/FDFT1 8 0.16% HMGS 8 0.16% ISY 7 0.14% CYP719 7 0.14% SQE 7 0.14% XMT_MXMT_DXMT 6 0.12% SMO1/SMO2 6 0.12% DET2 6 0.12% CHI 5 0.1% HDS/IspG 5 0.1% HDR/IspH 5 0.1% ODC 4 0.08% TDC 4 0.08% DXS 4 0.08% MVK 4 0.08% MVD 4 0.08% ADC 3 0.06% HCT 3 0.06% DWF1 3 0.06% HYD1 3 0.06% PMK 3 0.06% CMK/IspE 3 0.06% IDI 3 0.06% MCT/IspD 3 0.06% DWF5 2 0.04% DWF7 2 0.04% CPI1 2 0.04% FK 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 436 19 BAHD (130) View species results
Phenylpropanoid pathway 377 12 POD (148) View species results
Alkaloid pathway 368 27 GES (74) View species results
Rosmarinic acid pathway 191 7 C4H (102) View species results
Steroid pathway 108 13 SMT1/SMT2/SMT3 (47) View species results
Flavonoid pathway 105 12 4CL (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2506 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 181 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
Reset
Gene Pathway Family Confidence Status Best Target
Cann12G0025000.1 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
CannPGAv.1.6.scaffold10410001530.1 Alkaloid TRI/TRII low borderline TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
CannPGAv.1.6.scaffold10770002600.1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
CannPGAv.1.6.scaffold12630007790.1 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB