Capsicum baccatum (capsicum_baccatum)
Imported from atlas release summary for Capsicum baccatum.
1446
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1446
Candidate Genes
C4H
8.97%
C3'H/CYP98A
7.88%
CYP76
5.14%
IFS
4.79%
T3O
4.63%
4CL
3.38%
POD
3.19%
F3H
3.13%
Other Families
58.89%
More Families (97)
BAHD
149
3.05%
DWF4/CYP90B1
145
2.97%
F3'H/CYP75B
142
2.91%
BR6OX2/CYP85A2
132
2.7%
NMT
98
2.01%
CYP71
97
1.99%
H6H
85
1.74%
STR
84
1.72%
TPS
80
1.64%
CODM/T6ODM
74
1.52%
GES
73
1.49%
COMT
70
1.43%
CAD
68
1.39%
IO
61
1.25%
T16H
57
1.17%
CAS
56
1.15%
G8O/G8H
55
1.13%
BBE
54
1.11%
SMT1/SMT2/SMT3
53
1.09%
UGT
51
1.04%
F3'5'H/CYP75A
50
1.02%
TRI/TRII
48
0.98%
16OMT
47
0.96%
CSE
47
0.96%
CYP90D1
47
0.96%
F5H/CYP84A
45
0.92%
SLS
40
0.82%
LAC
38
0.78%
CYP51G1
37
0.76%
7DLH
36
0.74%
PYKS
35
0.72%
FNS
35
0.72%
PAL
33
0.68%
BR6OX1/CYP85A1
33
0.68%
GS
31
0.63%
7DLGT
30
0.61%
IFR
30
0.61%
LAMT
27
0.55%
TAT
26
0.53%
NCS
25
0.51%
CPD/CYP90A1
24
0.49%
SGD
23
0.47%
CCR
20
0.41%
UFGT
18
0.37%
ANR
18
0.37%
8HGO
17
0.35%
CNMT
15
0.31%
6OMT_4OMT_SOMT
15
0.31%
DFR
15
0.31%
CHS
15
0.31%
HPPR
14
0.29%
ANS/LDOX
12
0.25%
CCoAOMT
12
0.25%
ROT3/CYP90C1
12
0.25%
AACT
12
0.25%
FPPS
12
0.25%
MPO
11
0.23%
COR
10
0.2%
TYDC_DDC
10
0.2%
GGPPS
10
0.2%
CYP80B1
9
0.18%
ISY
9
0.18%
CPR
9
0.18%
HMGR
9
0.18%
PMT
8
0.16%
RAS
8
0.16%
SQS/FDFT1
8
0.16%
XMT_MXMT_DXMT
7
0.14%
SQE
7
0.14%
SMO1/SMO2
6
0.12%
DET2
6
0.12%
CYP719
5
0.1%
HDR/IspH
5
0.1%
HMGS
5
0.1%
ODC
4
0.08%
FLS
4
0.08%
HCT
4
0.08%
MVD
4
0.08%
CHI
3
0.06%
DWF1
3
0.06%
MVK
3
0.06%
DXS
3
0.06%
HDS/IspG
3
0.06%
IDI
3
0.06%
CMK/IspE
3
0.06%
CYP80F1
2
0.04%
TDC
2
0.04%
DWF5
2
0.04%
DWF7
2
0.04%
HYD1
2
0.04%
MDS/IspF
2
0.04%
PMK
2
0.04%
ADC
1
0.02%
FK
1
0.02%
DXR
1
0.02%
MCT/IspD
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 378 | 19 | BAHD (110) | View species results |
| Phenylpropanoid pathway | 367 | 12 | POD (140) | View species results |
| Alkaloid pathway | 327 | 26 | GES (65) | View species results |
| Rosmarinic acid pathway | 182 | 7 | C4H (96) | View species results |
| Flavonoid pathway | 98 | 12 | 4CL (39) | View species results |
| Steroid pathway | 94 | 12 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2563 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 161 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CbacCBv1.2.scaffold10800015380.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CbacCBv1.2.scaffold10800015390.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold10830016440.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold120035120.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold1210037020.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold1210037060.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold13370057520.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CbacCBv1.2.scaffold13940066500.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| CbacCBv1.2.scaffold14150070280.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| CbacCBv1.2.scaffold14800079260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold15260085670.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold160096600.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold1650101290.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold1770115220.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold18760123880.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| CbacCBv1.2.scaffold1950131080.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CbacCBv1.2.scaffold1960131890.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold2010138510.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| CbacCBv1.2.scaffold2100145900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CbacCBv1.2.scaffold2100146090.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CbacCBv1.2.scaffold2170151050.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| CbacCBv1.2.scaffold2260156710.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold2430165820.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| CbacCBv1.2.scaffold270179440.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CbacCBv1.2.scaffold2740181760.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold2740181770.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold2740181780.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold3280200690.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| CbacCBv1.2.scaffold3530209390.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| CbacCBv1.2.scaffold370215540.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| CbacCBv1.2.scaffold4290236750.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CbacCBv1.2.scaffold450240900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold450240910.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold450241110.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold5350260240.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CbacCBv1.2.scaffold5500263570.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold590271560.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold590271570.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold6370285830.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CbacCBv1.2.scaffold6570290760.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| CbacCBv1.2.scaffold6570290780.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| CbacCBv1.2.scaffold6570290790.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| CbacCBv1.2.scaffold6570290800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| CbacCBv1.2.scaffold6570290810.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| CbacCBv1.2.scaffold6580291490.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| CbacCBv1.2.scaffold6940299620.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CbacCBv1.2.scaffold7640314320.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| CbacCBv1.2.scaffold7650314540.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |