Cardamine hirsuta (cardamine_hirsuta)
Imported from atlas release summary for Cardamine hirsuta.
1757
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1757
Candidate Genes
BAHD
6.96%
C4H
6.07%
C3'H/CYP98A
5.81%
IFS
4.15%
CYP76
3.72%
UGT
3.6%
4CL
3.53%
POD
3.48%
Other Families
62.68%
More Families (95)
NMT
140
3.36%
T3O
135
3.24%
UFGT
134
3.22%
7DLGT
132
3.17%
F3H
114
2.74%
BR6OX2/CYP85A2
94
2.26%
DWF4/CYP90B1
93
2.23%
SMT1/SMT2/SMT3
78
1.87%
SGD
71
1.7%
CODM/T6ODM
69
1.66%
STR
66
1.58%
CAS
64
1.54%
CYP71
60
1.44%
TRI/TRII
57
1.37%
TPS
57
1.37%
H6H
56
1.34%
F3'H/CYP75B
55
1.32%
GES
52
1.25%
CSE
49
1.18%
CAD
47
1.13%
T16H
41
0.98%
IFR
38
0.91%
FNS
38
0.91%
F5H/CYP84A
35
0.84%
G8O/G8H
34
0.82%
BBE
31
0.74%
SLS
30
0.72%
PYKS
29
0.7%
COMT
29
0.7%
CYP90D1
28
0.67%
LAC
27
0.65%
ANR
25
0.6%
RAS
25
0.6%
7DLH
24
0.58%
F3'5'H/CYP75A
23
0.55%
TAT
23
0.55%
BR6OX1/CYP85A1
23
0.55%
HCT
22
0.53%
CCR
22
0.53%
IO
20
0.48%
GS
20
0.48%
NCS
19
0.46%
LAMT
19
0.46%
CPD/CYP90A1
19
0.46%
GGPPS
19
0.46%
16OMT
18
0.43%
8HGO
17
0.41%
DFR
16
0.38%
SQE
16
0.38%
ANS/LDOX
15
0.36%
CPR
15
0.36%
CNMT
14
0.34%
ROT3/CYP90C1
14
0.34%
COR
13
0.31%
CYP51G1
13
0.31%
PMT
11
0.26%
FPPS
11
0.26%
MPO
10
0.24%
AACT
10
0.24%
PAL
9
0.22%
CCoAOMT
8
0.19%
HPPR
8
0.19%
SMO1/SMO2
8
0.19%
CHI
7
0.17%
DWF7
7
0.17%
MVK
7
0.17%
CYP80B1
6
0.14%
PMK
6
0.14%
SQS/FDFT1
5
0.12%
DET2
5
0.12%
MVD
5
0.12%
DXS
5
0.12%
TDC
4
0.1%
CYP719
4
0.1%
CHS
4
0.1%
DWF1
4
0.1%
CYP80F1
3
0.07%
MCT/IspD
3
0.07%
ADC
2
0.05%
TYDC_DDC
2
0.05%
ISY
2
0.05%
FLS
2
0.05%
HYD1
2
0.05%
HMGR
2
0.05%
IDI
2
0.05%
CMK/IspE
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDR/IspH
1
0.02%
HMGS
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 556 | 20 | BAHD (247) | View species results |
| Alkaloid pathway | 416 | 19 | NMT (83) | View species results |
| Phenylpropanoid pathway | 320 | 11 | POD (141) | View species results |
| Flavonoid pathway | 190 | 10 | UFGT (125) | View species results |
| Steroid pathway | 143 | 11 | SMT1/SMT2/SMT3 (56) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (54) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1577 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 337 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Chir03G0006700.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Chir03G0006700.2 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Chir03G0011980.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Chir03G0014840.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Chir03G0014840.2 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Chir03G0014840.3 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Chir03G0018470.1 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Chir03G0020720.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Chir03G0021060.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Chir03G0022970.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Chir03G0024580.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Chir03G0024580.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Chir03G0024590.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Chir03G0028640.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Chir03G0028670.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Chir03G0035280.1 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| Chir04G0002300.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Chir04G0002890.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Chir04G0002890.2 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Chir04G0002890.3 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Chir04G0006020.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Chir04G0006020.2 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Chir04G0006030.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Chir04G0008970.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Chir04G0009190.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Chir04G0009200.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Chir04G0010320.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Chir04G0010330.1 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| Chir04G0013550.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Chir04G0013560.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Chir04G0017600.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Chir04G0019340.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Chir04G0019340.2 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Chir04G0019340.4 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Chir04G0027600.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Chir05G0026730.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Chir05G0028520.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Chir05G0028520.2 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Chir05G0028520.3 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Chir06G0000700.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Chir06G0000730.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Chir06G0000750.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Chir06G0005130.1 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Chir06G0005830.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Chir06G0009040.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Chir06G0009050.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Chir06G0009570.1 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Chir06G0010180.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Chir06G0015620.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Chir06G0025930.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |