Cardamine hirsuta (cardamine_hirsuta)
Imported from atlas release summary for Cardamine hirsuta.
1757
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1757
Candidate Genes
BAHD
6.96%
C4H
6.07%
C3'H/CYP98A
5.81%
IFS
4.15%
CYP76
3.72%
UGT
3.6%
4CL
3.53%
POD
3.48%
Other Families
62.68%
More Families (95)
NMT
140
3.36%
T3O
135
3.24%
UFGT
134
3.22%
7DLGT
132
3.17%
F3H
114
2.74%
BR6OX2/CYP85A2
94
2.26%
DWF4/CYP90B1
93
2.23%
SMT1/SMT2/SMT3
78
1.87%
SGD
71
1.7%
CODM/T6ODM
69
1.66%
STR
66
1.58%
CAS
64
1.54%
CYP71
60
1.44%
TRI/TRII
57
1.37%
TPS
57
1.37%
H6H
56
1.34%
F3'H/CYP75B
55
1.32%
GES
52
1.25%
CSE
49
1.18%
CAD
47
1.13%
T16H
41
0.98%
IFR
38
0.91%
FNS
38
0.91%
F5H/CYP84A
35
0.84%
G8O/G8H
34
0.82%
BBE
31
0.74%
SLS
30
0.72%
PYKS
29
0.7%
COMT
29
0.7%
CYP90D1
28
0.67%
LAC
27
0.65%
ANR
25
0.6%
RAS
25
0.6%
7DLH
24
0.58%
F3'5'H/CYP75A
23
0.55%
TAT
23
0.55%
BR6OX1/CYP85A1
23
0.55%
HCT
22
0.53%
CCR
22
0.53%
IO
20
0.48%
GS
20
0.48%
NCS
19
0.46%
LAMT
19
0.46%
CPD/CYP90A1
19
0.46%
GGPPS
19
0.46%
16OMT
18
0.43%
8HGO
17
0.41%
DFR
16
0.38%
SQE
16
0.38%
ANS/LDOX
15
0.36%
CPR
15
0.36%
CNMT
14
0.34%
ROT3/CYP90C1
14
0.34%
COR
13
0.31%
CYP51G1
13
0.31%
PMT
11
0.26%
FPPS
11
0.26%
MPO
10
0.24%
AACT
10
0.24%
PAL
9
0.22%
CCoAOMT
8
0.19%
HPPR
8
0.19%
SMO1/SMO2
8
0.19%
CHI
7
0.17%
DWF7
7
0.17%
MVK
7
0.17%
CYP80B1
6
0.14%
PMK
6
0.14%
SQS/FDFT1
5
0.12%
DET2
5
0.12%
MVD
5
0.12%
DXS
5
0.12%
TDC
4
0.1%
CYP719
4
0.1%
CHS
4
0.1%
DWF1
4
0.1%
CYP80F1
3
0.07%
MCT/IspD
3
0.07%
ADC
2
0.05%
TYDC_DDC
2
0.05%
ISY
2
0.05%
FLS
2
0.05%
HYD1
2
0.05%
HMGR
2
0.05%
IDI
2
0.05%
CMK/IspE
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDR/IspH
1
0.02%
HMGS
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 556 | 20 | BAHD (247) | View species results |
| Alkaloid pathway | 416 | 19 | NMT (83) | View species results |
| Phenylpropanoid pathway | 320 | 11 | POD (141) | View species results |
| Flavonoid pathway | 190 | 10 | UFGT (125) | View species results |
| Steroid pathway | 143 | 11 | SMT1/SMT2/SMT3 (56) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (54) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1577 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 337 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Chir01G0008250.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Chir01G0015620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir01G0015960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir01G0018340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir01G0030960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir01G0041520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir01G0041550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir01G0043390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir01G0043490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir01G0043490.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir02G0007130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir02G0018700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir02G0021070.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Chir02G0021080.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Chir03G0012970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir03G0016710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir03G0022080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir03G0022080.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir03G0029950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0007350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0011440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0011440.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0018960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0019770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0020520.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0020590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0022420.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0024650.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Chir04G0025070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0025070.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir04G0025070.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0000290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0000290.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0000290.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0003060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0007450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0017470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Chir05G0017480.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Chir05G0018530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0018530.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0018530.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0018530.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0019830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0019860.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0020150.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Chir05G0021560.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0021570.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0021580.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0021610.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Chir05G0023610.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |