Cardamine hirsuta (cardamine_hirsuta)
Imported from atlas release summary for Cardamine hirsuta.
1757
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1757
Candidate Genes
BAHD
6.96%
C4H
6.07%
C3'H/CYP98A
5.81%
IFS
4.15%
CYP76
3.72%
UGT
3.6%
4CL
3.53%
POD
3.48%
Other Families
62.68%
More Families (95)
NMT
140
3.36%
T3O
135
3.24%
UFGT
134
3.22%
7DLGT
132
3.17%
F3H
114
2.74%
BR6OX2/CYP85A2
94
2.26%
DWF4/CYP90B1
93
2.23%
SMT1/SMT2/SMT3
78
1.87%
SGD
71
1.7%
CODM/T6ODM
69
1.66%
STR
66
1.58%
CAS
64
1.54%
CYP71
60
1.44%
TRI/TRII
57
1.37%
TPS
57
1.37%
H6H
56
1.34%
F3'H/CYP75B
55
1.32%
GES
52
1.25%
CSE
49
1.18%
CAD
47
1.13%
T16H
41
0.98%
IFR
38
0.91%
FNS
38
0.91%
F5H/CYP84A
35
0.84%
G8O/G8H
34
0.82%
BBE
31
0.74%
SLS
30
0.72%
PYKS
29
0.7%
COMT
29
0.7%
CYP90D1
28
0.67%
LAC
27
0.65%
ANR
25
0.6%
RAS
25
0.6%
7DLH
24
0.58%
F3'5'H/CYP75A
23
0.55%
TAT
23
0.55%
BR6OX1/CYP85A1
23
0.55%
HCT
22
0.53%
CCR
22
0.53%
IO
20
0.48%
GS
20
0.48%
NCS
19
0.46%
LAMT
19
0.46%
CPD/CYP90A1
19
0.46%
GGPPS
19
0.46%
16OMT
18
0.43%
8HGO
17
0.41%
DFR
16
0.38%
SQE
16
0.38%
ANS/LDOX
15
0.36%
CPR
15
0.36%
CNMT
14
0.34%
ROT3/CYP90C1
14
0.34%
COR
13
0.31%
CYP51G1
13
0.31%
PMT
11
0.26%
FPPS
11
0.26%
MPO
10
0.24%
AACT
10
0.24%
PAL
9
0.22%
CCoAOMT
8
0.19%
HPPR
8
0.19%
SMO1/SMO2
8
0.19%
CHI
7
0.17%
DWF7
7
0.17%
MVK
7
0.17%
CYP80B1
6
0.14%
PMK
6
0.14%
SQS/FDFT1
5
0.12%
DET2
5
0.12%
MVD
5
0.12%
DXS
5
0.12%
TDC
4
0.1%
CYP719
4
0.1%
CHS
4
0.1%
DWF1
4
0.1%
CYP80F1
3
0.07%
MCT/IspD
3
0.07%
ADC
2
0.05%
TYDC_DDC
2
0.05%
ISY
2
0.05%
FLS
2
0.05%
HYD1
2
0.05%
HMGR
2
0.05%
IDI
2
0.05%
CMK/IspE
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDR/IspH
1
0.02%
HMGS
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 556 | 20 | BAHD (247) | View species results |
| Alkaloid pathway | 416 | 19 | NMT (83) | View species results |
| Phenylpropanoid pathway | 320 | 11 | POD (141) | View species results |
| Flavonoid pathway | 190 | 10 | UFGT (125) | View species results |
| Steroid pathway | 143 | 11 | SMT1/SMT2/SMT3 (56) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (54) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1577 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 337 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Chir01G0020820.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Chir01G0020830.1 | Flavonoid | 4CL | medium | pass | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Chir01G0020840.1 | Flavonoid | 4CL | medium | pass | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Chir01G0020850.1 | Flavonoid | 4CL | medium | pass | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Chir01G0020860.1 | Flavonoid | 4CL | medium | pass | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Chir01G0020870.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Chir01G0020920.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir01G0021800.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir01G0029830.1 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Chir01G0029830.2 | Flavonoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Chir01G0039340.1 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Chir01G0041720.1 | Flavonoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Chir01G0041730.1 | Flavonoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Chir02G0000440.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Chir02G0000450.1 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Chir02G0002230.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir02G0002660.1 | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Chir02G0010460.1 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Chir02G0011670.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir02G0011680.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir02G0011690.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir02G0024630.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir02G0025020.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Chir03G0005630.1 | Flavonoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Chir03G0005630.2 | Flavonoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Chir03G0016490.1 | Flavonoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Chir03G0017350.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir03G0022290.1 | Flavonoid | 4CL | medium | pass | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Chir03G0022300.1 | Flavonoid | 4CL | medium | pass | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Chir03G0024930.1 | Flavonoid | 4CL | low | borderline | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Chir03G0027370.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Chir03G0028840.1 | Flavonoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Chir03G0033040.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir04G0030910.1 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Chir04G0030910.2 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Chir05G0014250.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Chir05G0014260.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Chir06G0012630.1 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Chir06G0012630.2 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Chir06G0023390.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Chir07G0003870.1 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Chir07G0004320.1 | Flavonoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Chir07G0007680.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Chir07G0013540.1 | Flavonoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Chir07G0018850.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Chir08G0004450.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Chir08G0004450.2 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Chir08G0007640.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Chir08G0029270.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Chir01G0009340.1 | Flavonoid | ANR | medium | borderline | ANR__00001__sp_Q5FB34_ANRCS_VITVI |