PlantSME Plant secondary metabolism enzyme database

Cardamine hirsuta (cardamine_hirsuta)

Imported from atlas release summary for Cardamine hirsuta.

1757
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 556 20 BAHD (247) View species results
Alkaloid pathway 416 19 NMT (83) View species results
Phenylpropanoid pathway 320 11 POD (141) View species results
Flavonoid pathway 190 10 UFGT (125) View species results
Steroid pathway 143 11 SMT1/SMT2/SMT3 (56) View species results
Rosmarinic acid pathway 132 7 C4H (54) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1577 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 337 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Chir01G0020820.1 Rosmarinic Acid 4CL medium pass
Chir01G0020830.1 Rosmarinic Acid 4CL medium pass
Chir01G0020840.1 Rosmarinic Acid 4CL medium pass
Chir01G0020850.1 Rosmarinic Acid 4CL medium pass
Chir01G0020860.1 Rosmarinic Acid 4CL medium pass
Chir01G0020870.1 Rosmarinic Acid 4CL medium pass
Chir01G0020920.1 Rosmarinic Acid 4CL medium pass
Chir01G0021800.1 Rosmarinic Acid 4CL medium pass
Chir01G0029830.1 Rosmarinic Acid 4CL low borderline
Chir01G0029830.2 Rosmarinic Acid 4CL low borderline
Chir01G0039340.1 Rosmarinic Acid 4CL low borderline
Chir01G0041720.1 Rosmarinic Acid 4CL medium pass
Chir01G0041730.1 Rosmarinic Acid 4CL medium pass
Chir02G0000440.1 Rosmarinic Acid 4CL low borderline
Chir02G0000450.1 Rosmarinic Acid 4CL low borderline
Chir02G0002230.1 Rosmarinic Acid 4CL medium pass
Chir02G0002660.1 Rosmarinic Acid 4CL medium pass
Chir02G0010460.1 Rosmarinic Acid 4CL medium pass
Chir02G0011670.1 Rosmarinic Acid 4CL medium pass
Chir02G0011680.1 Rosmarinic Acid 4CL medium pass
Chir02G0011690.1 Rosmarinic Acid 4CL medium pass
Chir02G0024630.1 Rosmarinic Acid 4CL medium pass
Chir02G0025020.1 Rosmarinic Acid 4CL low borderline
Chir03G0005630.1 Rosmarinic Acid 4CL medium pass
Chir03G0005630.2 Rosmarinic Acid 4CL low borderline
Chir03G0016490.1 Rosmarinic Acid 4CL low borderline
Chir03G0017350.1 Rosmarinic Acid 4CL medium pass
Chir03G0022290.1 Rosmarinic Acid 4CL medium pass
Chir03G0022300.1 Rosmarinic Acid 4CL medium pass
Chir03G0024930.1 Rosmarinic Acid 4CL low borderline
Chir03G0027370.1 Rosmarinic Acid 4CL low borderline
Chir03G0028840.1 Rosmarinic Acid 4CL medium pass
Chir03G0033040.1 Rosmarinic Acid 4CL medium pass
Chir04G0030910.1 Rosmarinic Acid 4CL low borderline
Chir04G0030910.2 Rosmarinic Acid 4CL low borderline
Chir05G0014250.1 Rosmarinic Acid 4CL medium pass
Chir05G0014260.1 Rosmarinic Acid 4CL medium pass
Chir06G0012630.1 Rosmarinic Acid 4CL low borderline
Chir06G0012630.2 Rosmarinic Acid 4CL low borderline
Chir06G0023390.1 Rosmarinic Acid 4CL medium pass
Chir07G0003870.1 Rosmarinic Acid 4CL low borderline
Chir07G0004320.1 Rosmarinic Acid 4CL low borderline
Chir07G0007680.1 Rosmarinic Acid 4CL low borderline
Chir07G0013540.1 Rosmarinic Acid 4CL medium pass
Chir07G0018850.1 Rosmarinic Acid 4CL low borderline
Chir08G0004450.1 Rosmarinic Acid 4CL medium pass
Chir08G0004450.2 Rosmarinic Acid 4CL medium pass
Chir08G0007640.1 Rosmarinic Acid 4CL low borderline
Chir08G0029270.1 Rosmarinic Acid 4CL medium pass
Chir01G0000640.1 Rosmarinic Acid C4H low borderline